MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:478.8 nTPM
HPA:478.8 nTPM
GTEx:347.1 nTPM
FANTOM5:539.4 Scaled Tags Per Million
Mouse:604.3 nTPM
Allen mouse:11.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 478.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 362.7
2586 Male, age 75, left hemisphere 467.5
2828 Female, age 72, unknown 467.2
2666 Male, age 74, left hemisphere 375.7
1827 Male, age 72, unknown 359.7
1833 Male, age 53, unknown 358.8
2411 Female, age 72, unknown 333.8
1870 Female, age 42, unknown 332.5
1830 Male, age 51, unknown 329.8
2219 Male, age 76, both hemispheres 307.8
2019 Male, age 18, unknown 294.0
Dorsal raphe nucleus
nTPM: 407.7
1828 Male, age 53, unknown 476.0
2047 Male, age 72, unknown 450.7
2016 Female, age 72, unknown 410.4
2298 Female, age 72, unknown 365.0
2750 Male, age 76, both hemispheres 336.6
Inferior colliculus
nTPM: 478.8
1848 Female, age 42, unknown 501.9
1890 Male, age 53, unknown 474.2
2849 Male, age 72, unknown 472.0
2097 Female, age 72, unknown 467.1
Median raphe nucleus
nTPM: 313.9
2220 Male, age 76, midline 313.9
Pedunculopontine tegmental nucleus
nTPM: 306.3
1921 Female, age 85, both hemispheres 377.1
2334 Male, age 80, both hemispheres 341.1
2338 Male, age 61, both hemispheres 200.8
Periaquaductal grey, anterior
nTPM: 388.9
2502 Female, age 75, unknown 403.9
1947 Male, age 18, unknown 398.5
1795 Male, age 51, unknown 364.4
Periaquaductal grey, dorsal
nTPM: 400.4
1840 Male, age 53, unknown 432.8
2464 Female, age 72, unknown 427.6
2850 Male, age 76, both hemispheres 401.3
1831 Male, age 72, unknown 339.8
Periaquaductal grey, lateral
nTPM: 362.0
2053 Male, age 18, unknown 416.3
2140 Male, age 76, both hemispheres 405.1
2272 Male, age 74, both hemispheres 264.6
Pretectal area
nTPM: 378.6
1817 Female, age 42, unknown 475.9
2667 Female, age 75, unknown 459.3
2825 Male, age 18, unknown 417.3
1816 Male, age 51, unknown 413.9
1944 Female, age 72, unknown 411.3
1815 Male, age 53, unknown 369.6
2316 Male, age 76, right hemisphere 343.9
2224 Female, age 72, unknown 340.1
2007 Male, age 72, unknown 323.1
2407 Male, age 75, both hemispheres 308.7
2273 Male, age 74, both hemispheres 301.8
Red nucleus
nTPM: 434.8
1954 Female, age 42, unknown 497.6
1821 Female, age 72, unknown 497.5
2503 Female, age 72, unknown 491.6
2588 Male, age 74, left hemisphere 483.7
2823 Male, age 76, right hemisphere 475.6
2227 Male, age 72, unknown 468.5
2769 Male, age 72, unknown 466.4
2725 Female, age 75, unknown 412.9
1904 Male, age 53, unknown 412.5
1865 Male, age 51, unknown 411.5
2584 Male, age 75, left hemisphere 309.4
2785 Male, age 18, unknown 290.3
Substantia nigra
nTPM: 391.5
2699 Male, age 18, unknown 509.4
1916 Female, age 42, unknown 422.1
1889 Female, age 72, unknown 413.6
2665 Male, age 74, both hemispheres 408.0
2241 Male, age 72, unknown 402.6
1851 Male, age 51, unknown 381.7
2409 Female, age 72, unknown 373.6
2583 Male, age 75, right hemisphere 341.5
2590 Female, age 75, unknown 332.1
1941 Male, age 53, unknown 330.2
Superior colliculus
nTPM: 374.1
2664 Male, age 75, both hemispheres 448.0
2087 Female, age 72, unknown 421.3
1839 Male, age 51, unknown 400.4
2261 Male, age 18, unknown 388.0
1995 Male, age 72, unknown 367.6
1796 Male, age 53, unknown 364.6
1895 Male, age 76, right hemisphere 352.3
2668 Female, age 75, unknown 351.7
2587 Male, age 74, left hemisphere 339.8
1913 Female, age 42, unknown 307.8
Ventral tegmental area
nTPM: 351.7
2410 Female, age 72, unknown 394.3
1915 Female, age 42, unknown 356.1
1942 Male, age 51, unknown 354.0
2021 Male, age 53, unknown 344.2
2218 Male, age 76, both hemispheres 344.0
2223 Female, age 72, unknown 317.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 347.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 347.1
Samples: 139

Max nTPM: 1476.9
Min nTPM: 60.7
Std nTPM: 211.8
Median nTPM: 301.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1476.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 1202.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 864.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 807.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 787.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 754.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 748.5
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 689.0
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 682.4
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 668.8
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 646.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 539.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 539.4
FF:10158-103A5 76 years, female 539.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 604.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 604.3
Samples: 4

Max nTPM: 646.2
Min nTPM: 561.7
Sample A Male 582.3
Sample B Male 561.7
Sample C Female 626.8
Sample D Female 646.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.1
69173256 Antisense, RP_050329_01_C04, Mouse strain C57BL/6J (56 days, male) 11.1

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