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ATP1A2
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  • ATP1A2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:401.5 nTPM
HPA:401.5 nTPM
GTEx:428.8 nTPM
FANTOM5:858.5 Scaled Tags Per Million
Mouse:445.0 nTPM
Allen mouse:7.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 401.5
Sample id Sample description nTPM
Amygdala
nTPM: 401.5
2695 Female, age 67, right hemisphere 523.3
2514 Male, age 75, right hemisphere 416.7
2814 Male, age 76, right hemisphere 383.6
2517 Female, age 94, left hemisphere 342.8
1987 Female, age 91, left hemisphere 340.9
Basal amygdala
nTPM: 376.7
2609 Male, age 75, right hemisphere 532.9
2110 Male, age 80, left hemisphere 391.8
2243 Female, age 91, right hemisphere 363.6
1955 Male, age 76, both hemispheres 346.7
2685 Female, age 94, left hemisphere 316.8
2827 Female, age 67, right hemisphere 308.3
Central amygdala
nTPM: 376.1
2515 Male, age 75, right hemisphere 408.3
1905 Male, age 76, both hemispheres 387.5
2239 Male, age 80, left hemisphere 383.2
2701 Female, age 91, right hemisphere 354.5
2826 Female, age 94, left hemisphere 347.2
Corticomedial amygdala
nTPM: 358.6
2428 Male, age 75, right hemisphere 449.7
2829 Male, age 80, left hemisphere 428.6
2242 Female, age 91, right hemisphere 341.7
2240 Male, age 76, both hemispheres 328.6
2429 Female, age 94, left hemisphere 313.6
2535 Female, age 67, right hemisphere 289.4
Lateral amygdala
nTPM: 382.6
2516 Male, age 75, right hemisphere 495.7
2256 Male, age 80, left hemisphere 411.9
1883 Male, age 76, both hemispheres 369.4
2255 Female, age 91, right hemisphere 360.6
2830 Female, age 67, right hemisphere 340.0
2534 Female, age 94, left hemisphere 318.1
Stria terminalis, bed nucleus
nTPM: 285.4
2201 Male, age 74, unknown 314.8
2486 Female, age 94, both hemispheres 277.2
1974 Female, age 91, both hemispheres 264.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 428.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 428.8
Samples: 152

Max nTPM: 1061.5
Min nTPM: 9.4
Std nTPM: 198.5
Median nTPM: 423.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1061.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 938.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 935.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 931.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 918.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 801.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 798.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 798.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 765.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 764.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 751.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 741.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 739.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 717.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 716.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 705.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 659.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 651.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 650.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 641.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 637.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 629.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 611.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 610.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 597.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 593.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 593.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 591.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 583.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 581.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 580.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 580.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 580.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 567.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 566.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 564.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 563.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 560.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 556.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 553.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 551.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 549.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 544.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 543.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 540.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 534.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 533.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 520.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 519.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 506.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 505.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 494.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 483.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 482.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 479.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 479.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 471.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 469.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 461.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 459.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 455.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 453.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 451.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 450.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 450.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 444.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 441.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 440.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 435.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 435.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 434.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 434.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 432.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 429.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 426.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 424.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 422.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 420.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 417.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 414.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 407.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 403.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 396.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 392.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 392.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 390.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 377.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 371.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 370.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 368.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 359.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 357.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 356.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 354.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 353.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 353.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 349.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 345.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 340.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 334.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 333.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 332.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 318.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 311.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 311.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 311.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 303.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 301.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 289.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 287.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 283.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 282.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 281.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 281.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 276.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 258.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 254.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 250.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 249.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 249.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 247.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 246.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 240.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 239.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 235.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 233.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 229.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 229.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 228.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 224.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 223.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 220.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 220.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 206.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 197.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 193.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 190.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 188.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 184.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 173.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 170.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 164.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 164.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 162.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 161.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 144.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 117.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 102.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 101.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 71.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 65.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 9.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 858.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 858.5
FF:10151-102I7 76 years, female 858.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 445.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 445.0
Samples: 4

Max nTPM: 526.8
Min nTPM: 371.6
Sample A Male 413.4
Sample B Male 371.6
Sample C Female 526.8
Sample D Female 468.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 7.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 7.9
69173256 Antisense, RP_050329_01_C04, Mouse strain C57BL/6J (56 days, male) 7.9

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