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ATP1A2
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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:375.3 nTPM
HPA:375.3 nTPM
FANTOM5:1174.1 Scaled Tags Per Million
Allen mouse:9.5 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 375.3
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 277.5
1984 Male, age 76, both hemispheres 343.2
2301 Female, age 85, both hemispheres 269.8
2090 Male, age 80, both hemispheres 262.6
2188 Female, age 91, both hemispheres 234.4
Dorsal cochlear nucleus
nTPM: 375.3
2802 Male, age 74, right hemisphere 438.8
2370 Male, age 61, both hemispheres 408.5
2058 Male, age 76, both hemispheres 398.9
2378 Male, age 80, both hemispheres 353.6
2187 Female, age 91, both hemispheres 276.5
Dorsal tegmental nucleus
nTPM: 314.8
1936 Male, age 76, left hemisphere 374.7
2083 Male, age 80, both hemispheres 367.0
2326 Male, age 74, both hemispheres 332.7
2358 Male, age 61, both hemispheres 184.8
Dorsolateral tegmental area
nTPM: 304.7
2654 Male, age 80, both hemispheres 363.8
2751 Female, age 85, both hemispheres 359.1
2141 Male, age 76, both hemispheres 339.2
2360 Male, age 74, both hemispheres 291.8
2337 Male, age 61, both hemispheres 169.5
Kolliker-Fuse nucleus
nTPM: 326.9
2315 Male, age 76, right hemisphere 410.3
2163 Male, age 80, both hemispheres 328.5
2793 Female, age 91, left hemisphere 241.9
Lateral lemniscal nuclei
nTPM: 290.2
2169 Male, age 76, both hemispheres 349.5
2453 Male, age 74, right hemisphere 323.1
2036 Male, age 80, both hemispheres 272.8
2746 Female, age 85, left hemisphere 266.1
2320 Female, age 91, left hemisphere 239.6
Lateral parabrachial nucleus
nTPM: 289.0
2139 Female, age 85, right hemisphere 357.5
2792 Male, age 76, both hemispheres 322.6
2013 Male, age 80, both hemispheres 289.8
2790 Male, age 61, both hemispheres 186.0
Lateral vestibular nucleus
nTPM: 352.1
2184 Male, age 76, both hemispheres 386.3
2311 Male, age 80, both hemispheres 317.8
Locus coeruleus
nTPM: 315.7
2317 Female, age 72, unknown 355.0
2788 Male, age 74, unknown 352.9
1980 Male, age 76, both hemispheres 316.2
2123 Female, age 91, both hemispheres 312.8
2014 Male, age 55, unknown 300.8
2720 Male, age 74, both hemispheres 287.6
2162 Male, age 80, both hemispheres 284.8
Medial olivary nucleus
nTPM: 344.9
2138 Female, age 91, both hemispheres 451.1
1962 Male, age 76, both hemispheres 335.1
2851 Male, age 80, both hemispheres 322.5
1943 Male, age 61, both hemispheres 270.8
Medial parabrachial nucleus
nTPM: 301.3
2786 Male, age 76, both hemispheres 355.6
2463 Female, age 85, right hemisphere 326.2
2854 Male, age 80, both hemispheres 296.4
2170 Female, age 91, both hemispheres 292.7
2156 Male, age 61, both hemispheres 235.6
Medial periolivary nuclei
nTPM: 280.4
2063 Male, age 76, both hemispheres 329.9
2791 Male, age 74, right hemisphere 292.0
2171 Female, age 85, both hemispheres 283.1
2458 Female, age 91, both hemispheres 263.7
2081 Male, age 80, both hemispheres 233.2
Motor facial nucleus
nTPM: 311.5
2795 Female, age 91, both hemispheres 490.0
2062 Male, age 76, both hemispheres 375.6
2126 Male, age 61, both hemispheres 286.4
2365 Male, age 74, right hemisphere 268.5
2327 Male, age 80, both hemispheres 234.8
2697 Female, age 85, both hemispheres 213.6
Motor trigeminal nucleus
nTPM: 282.6
2309 Male, age 76, both hemispheres 375.4
2560 Male, age 74, both hemispheres 282.5
2335 Male, age 61, both hemispheres 260.8
2079 Male, age 80, both hemispheres 259.7
2321 Female, age 91, both hemispheres 234.4
Nuclei of the trapezoid body
nTPM: 312.0
2368 Female, age 91, both hemispheres 367.3
1983 Male, age 76, both hemispheres 351.4
2159 Male, age 61, both hemispheres 306.8
2735 Female, age 85, both hemispheres 283.4
2166 Male, age 80, both hemispheres 251.0
Paramedian reticular nucleus
nTPM: 309.8
2052 Male, age 76, both hemispheres 321.7
2313 Male, age 61, both hemispheres 321.7
2057 Male, age 80, both hemispheres 315.3
2050 Female, age 85, both hemispheres 280.6
Pontine nuclei
nTPM: 263.0
1968 Male, age 76, left hemisphere 323.5
1863 Male, age 55, unknown 321.1
2109 Female, age 72, unknown 262.6
2787 Female, age 85, both hemispheres 244.1
2115 Male, age 80, left hemisphere 242.5
2727 Male, age 61, right hemisphere 240.2
2319 Female, age 91, both hemispheres 238.0
2454 Male, age 74, left hemisphere 231.8
Pontine raphe nucleus
nTPM: 339.7
2853 Male, age 76, midline 390.5
2122 Female, age 85, midline 288.8
Posteroventral cochlear nucleus
nTPM: 312.9
2371 Male, age 61, both hemispheres 418.7
2070 Male, age 76, both hemispheres 326.1
2752 Female, age 85, both hemispheres 320.2
2341 Male, age 80, both hemispheres 273.2
2135 Female, age 91, both hemispheres 226.3
Principal sensory trigeminal nucleus
nTPM: 298.1
2324 Male, age 76, both hemispheres 439.8
2158 Male, age 61, both hemispheres 269.5
2008 Male, age 80, left hemisphere 261.5
2367 Female, age 91, left hemisphere 221.6
Reticular pontine nucleus, caudal
nTPM: 292.8
2092 Male, age 76, both hemispheres 346.9
2457 Female, age 91, both hemispheres 285.6
2332 Male, age 80, right hemisphere 285.3
2559 Male, age 74, both hemispheres 253.5
Reticular pontine nucleus, oral
nTPM: 306.9
2167 Male, age 76, both hemispheres 379.9
1939 Male, age 80, both hemispheres 370.7
2012 Female, age 85, both hemispheres 320.5
2366 Female, age 91, both hemispheres 245.2
2361 Male, age 74, both hemispheres 218.0
Reticulotegmental nucleus
nTPM: 358.7
2333 Male, age 80, both hemispheres 376.9
2322 Female, age 91, both hemispheres 372.6
2325 Male, age 76, both hemispheres 359.1
2452 Male, age 74, both hemispheres 326.2
Spinal trigeminal nucleus, oral
nTPM: 317.5
1978 Male, age 76, both hemispheres 349.8
2737 Female, age 85, both hemispheres 320.0
2164 Male, age 80, both hemispheres 282.7
Subcoeruleus area
nTPM: 330.6
2369 Female, age 85, left hemisphere 374.1
2451 Male, age 74, both hemispheres 342.2
1958 Male, age 80, both hemispheres 321.1
2323 Female, age 91, left hemisphere 318.9
2089 Male, age 76, left hemisphere 296.8
Superior olive
nTPM: 265.4
2020 Male, age 76, both hemispheres 285.2
2561 Female, age 91, both hemispheres 274.3
2364 Male, age 74, right hemisphere 263.7
2329 Male, age 80, right hemisphere 259.5
1875 Female, age 85, both hemispheres 244.4
Superior vestibular nucleus
nTPM: 339.8
2061 Male, age 76, both hemispheres 387.0
2015 Male, age 80, both hemispheres 322.2
2383 Male, age 74, both hemispheres 310.3
Ventral periolivary nuclei
nTPM: 277.1
2130 Female, age 85, both hemispheres 311.0
2165 Male, age 80, both hemispheres 297.6
2023 Male, age 76, both hemispheres 266.7
2794 Female, age 91, left hemisphere 233.1
Ventrolateral tegmental area, A5 NE cell group
nTPM: 293.0
2456 Female, age 91, both hemispheres 327.1
1959 Male, age 76, both hemispheres 312.7
2840 Female, age 85, both hemispheres 306.8
2449 Male, age 74, both hemispheres 285.4
2161 Male, age 80, both hemispheres 274.3
2359 Male, age 61, both hemispheres 251.6

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 1174.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 1174.1
FF:10182-103D2 60 years, female 1692.6
FF:10165-103B3 76 years, female 655.5
Pons
Scaled Tags Per Million: 623.6
FF:10033-101E6 18-54 years, mixed 623.6

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 9.5
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 9.5
69173256 Antisense, RP_050329_01_C04, Mouse strain C57BL/6J (56 days, male) 9.5

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