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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1011.3 nTPM
HPA:1011.3 nTPM
GTEx:1015.0 nTPM
FANTOM5:803.1 Scaled Tags Per Million
Pig:188.9 nTPM
Mouse:216.3 nTPM
Allen mouse:2.0 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 1011.3
Sample id Sample description nTPM
Amygdala
nTPM: 1010.2
2695 Female, age 67, right hemisphere 1222.9
2814 Male, age 76, right hemisphere 1070.8
2514 Male, age 75, right hemisphere 938.1
1987 Female, age 91, left hemisphere 931.3
2517 Female, age 94, left hemisphere 888.1
Basal amygdala
nTPM: 932.1
2827 Female, age 67, right hemisphere 1035.7
2609 Male, age 75, right hemisphere 1031.9
2110 Male, age 80, left hemisphere 900.6
2243 Female, age 91, right hemisphere 880.3
1955 Male, age 76, both hemispheres 876.6
2685 Female, age 94, left hemisphere 867.3
Central amygdala
nTPM: 993.8
2826 Female, age 94, left hemisphere 1155.7
1905 Male, age 76, both hemispheres 983.5
2515 Male, age 75, right hemisphere 980.0
2701 Female, age 91, right hemisphere 928.8
2239 Male, age 80, left hemisphere 921.0
Corticomedial amygdala
nTPM: 869.9
2428 Male, age 75, right hemisphere 947.8
2829 Male, age 80, left hemisphere 908.7
2535 Female, age 67, right hemisphere 882.5
2242 Female, age 91, right hemisphere 842.3
2240 Male, age 76, both hemispheres 832.0
2429 Female, age 94, left hemisphere 806.3
Lateral amygdala
nTPM: 1011.3
2830 Female, age 67, right hemisphere 1192.5
2516 Male, age 75, right hemisphere 1102.3
1883 Male, age 76, both hemispheres 979.2
2256 Male, age 80, left hemisphere 968.9
2534 Female, age 94, left hemisphere 927.2
2255 Female, age 91, right hemisphere 897.8
Stria terminalis, bed nucleus
nTPM: 798.3
2201 Male, age 74, unknown 883.9
1974 Female, age 91, both hemispheres 775.8
2486 Female, age 94, both hemispheres 735.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1015.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1015.0
Samples: 152

Max nTPM: 2653.5
Min nTPM: 11.5
Std nTPM: 437.2
Median nTPM: 895.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 2653.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 2259.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2101.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2084.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 2022.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 2004.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1987.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1962.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1924.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1865.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1842.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1782.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1731.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1724.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1701.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1679.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1582.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1523.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1503.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1501.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1493.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1490.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1467.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1445.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1432.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1415.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1400.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1360.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1355.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1324.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1319.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1312.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1300.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1285.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1272.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1268.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1254.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1248.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1242.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1240.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1233.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1210.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1203.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1193.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1185.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1166.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1164.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1148.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1141.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1135.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1114.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1106.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1104.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1095.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1084.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1076.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1069.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1055.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1053.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1048.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1036.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1031.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1030.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1024.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1018.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1015.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 996.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 980.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 979.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 973.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 958.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 950.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 925.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 913.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 903.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 895.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 895.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 893.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 889.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 886.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 882.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 877.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 874.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 858.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 850.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 849.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 843.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 819.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 803.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 795.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 791.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 790.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 786.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 774.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 771.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 771.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 767.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 763.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 762.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 761.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 759.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 757.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 755.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 755.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 751.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 749.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 742.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 737.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 728.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 727.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 719.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 717.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 707.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 706.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 703.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 698.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 684.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 662.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 650.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 649.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 642.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 640.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 636.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 632.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 625.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 623.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 623.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 622.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 621.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 601.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 600.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 597.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 597.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 597.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 594.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 591.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 583.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 583.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 580.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 543.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 541.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 537.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 536.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 536.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 531.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 511.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 502.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 497.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 480.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 427.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 303.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 11.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 803.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 803.1
FF:10151-102I7 76 years, female 803.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 188.9
Pig sample Sample description nTPM
Amygdala
nTPM: 188.9
Samples: 4

Max nTPM: 239.6
Min nTPM: 128.3
Sample A Female 170.1
Sample B Female 239.6
Sample C Male 217.5
Sample D Male 128.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 216.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 216.3
Samples: 4

Max nTPM: 316.8
Min nTPM: 180.4
Sample A Male 183.7
Sample B Male 184.3
Sample C Female 316.8
Sample D Female 180.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.0
71836842 Antisense, RP_051017_02_C05, Mouse strain C57BL/6J (56 days, male) 3.4
68196931 Antisense, RP_041116_01_F10, Mouse strain C57BL/6J (56 days, male) 0.6

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