MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1259.8 nTPM
HPA:1259.8 nTPM
GTEx:1816.7 nTPM
FANTOM5:1616.4 Scaled Tags Per Million
Pig:677.4 nTPM
Mouse:697.2 nTPM
Allen mouse:4.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1259.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1117.7
1870 Female, age 42, unknown 1212.6
2828 Female, age 72, unknown 1209.6
1830 Male, age 51, unknown 1181.7
1833 Male, age 53, unknown 1169.2
2411 Female, age 72, unknown 1134.9
2666 Male, age 74, left hemisphere 1117.6
2019 Male, age 18, unknown 1079.1
2586 Male, age 75, left hemisphere 1068.6
1827 Male, age 72, unknown 1027.3
2219 Male, age 76, both hemispheres 976.5
Dorsal raphe nucleus
nTPM: 1072.4
2750 Male, age 76, both hemispheres 1249.0
2016 Female, age 72, unknown 1120.8
1828 Male, age 53, unknown 1049.1
2047 Male, age 72, unknown 993.9
2298 Female, age 72, unknown 949.1
Inferior colliculus
nTPM: 993.8
2849 Male, age 72, unknown 1030.4
1890 Male, age 53, unknown 1012.5
1848 Female, age 42, unknown 998.8
2097 Female, age 72, unknown 933.4
Median raphe nucleus
nTPM: 1067.2
2220 Male, age 76, midline 1067.2
Pedunculopontine tegmental nucleus
nTPM: 1030.9
2334 Male, age 80, both hemispheres 1102.0
1921 Female, age 85, both hemispheres 1013.3
2338 Male, age 61, both hemispheres 977.3
Periaquaductal grey, anterior
nTPM: 955.5
2502 Female, age 75, unknown 976.2
1795 Male, age 51, unknown 958.7
1947 Male, age 18, unknown 931.6
Periaquaductal grey, dorsal
nTPM: 993.7
2464 Female, age 72, unknown 1044.3
2850 Male, age 76, both hemispheres 1002.8
1831 Male, age 72, unknown 992.4
1840 Male, age 53, unknown 935.4
Periaquaductal grey, lateral
nTPM: 987.6
2053 Male, age 18, unknown 1064.5
2140 Male, age 76, both hemispheres 963.5
2272 Male, age 74, both hemispheres 934.9
Pretectal area
nTPM: 974.9
2316 Male, age 76, right hemisphere 1077.2
1815 Male, age 53, unknown 1073.0
2825 Male, age 18, unknown 1049.6
1817 Female, age 42, unknown 976.1
2667 Female, age 75, unknown 970.1
2407 Male, age 75, both hemispheres 960.9
2224 Female, age 72, unknown 952.7
2273 Male, age 74, both hemispheres 946.6
1944 Female, age 72, unknown 928.7
2007 Male, age 72, unknown 910.1
1816 Male, age 51, unknown 878.7
Red nucleus
nTPM: 1259.8
2503 Female, age 72, unknown 1396.9
2769 Male, age 72, unknown 1349.6
2227 Male, age 72, unknown 1340.9
2823 Male, age 76, right hemisphere 1325.8
1904 Male, age 53, unknown 1321.6
1865 Male, age 51, unknown 1290.3
1821 Female, age 72, unknown 1281.0
2588 Male, age 74, left hemisphere 1258.2
1954 Female, age 42, unknown 1202.1
2785 Male, age 18, unknown 1165.8
2584 Male, age 75, left hemisphere 1097.5
2725 Female, age 75, unknown 1088.0
Substantia nigra
nTPM: 1063.3
2699 Male, age 18, unknown 1200.5
2590 Female, age 75, unknown 1123.8
2665 Male, age 74, both hemispheres 1112.9
1851 Male, age 51, unknown 1109.2
2583 Male, age 75, right hemisphere 1061.6
2409 Female, age 72, unknown 1029.2
1889 Female, age 72, unknown 1025.0
1916 Female, age 42, unknown 1017.6
1941 Male, age 53, unknown 979.2
2241 Male, age 72, unknown 974.0
Superior colliculus
nTPM: 1061.7
1913 Female, age 42, unknown 1275.8
1995 Male, age 72, unknown 1238.5
2587 Male, age 74, left hemisphere 1101.3
2668 Female, age 75, unknown 1095.3
1839 Male, age 51, unknown 1070.0
1895 Male, age 76, right hemisphere 1024.4
1796 Male, age 53, unknown 1003.0
2664 Male, age 75, both hemispheres 967.5
2087 Female, age 72, unknown 935.1
2261 Male, age 18, unknown 906.6
Ventral tegmental area
nTPM: 1112.0
2223 Female, age 72, unknown 1238.0
2410 Female, age 72, unknown 1155.8
2021 Male, age 53, unknown 1094.9
1942 Male, age 51, unknown 1075.5
1915 Female, age 42, unknown 1058.4
2218 Male, age 76, both hemispheres 1049.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1816.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1816.7
Samples: 139

Max nTPM: 4227.9
Min nTPM: 442.7
Std nTPM: 740.3
Median nTPM: 1609.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 4227.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 4005.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 3473.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 3429.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 3402.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 3309.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 3299.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 3236.8
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 3212.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 3154.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 3121.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1616.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1616.4
FF:10158-103A5 76 years, female 1616.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 677.4
Pig sample Sample description nTPM
Midbrain
nTPM: 677.4
Samples: 4

Max nTPM: 1260.2
Min nTPM: 356.1
Sample A Female 1260.2
Sample B Female 734.7
Sample C Male 358.7
Sample D Male 356.1
Periaqueductal gray
nTPM: 597.1
Samples: 3

Max nTPM: 621.4
Min nTPM: 579.6
Sample B Female 621.4
Sample C Male 590.3
Sample D Male 579.6
Substantia nigra
nTPM: 625.0
Samples: 4

Max nTPM: 850.1
Min nTPM: 433.3
Sample A Female 634.2
Sample B Female 433.3
Sample C Male 582.5
Sample D Male 850.1
Superior colliculi
nTPM: 495.5
Samples: 4

Max nTPM: 595.1
Min nTPM: 314.8
Sample A Female 541.0
Sample B Female 314.8
Sample C Male 531.0
Sample D Male 595.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 697.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 697.2
Samples: 4

Max nTPM: 761.1
Min nTPM: 658.1
Sample A Male 761.1
Sample B Male 658.1
Sample C Female 660.5
Sample D Female 709.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.2
71836842 Antisense, RP_051017_02_C05, Mouse strain C57BL/6J (56 days, male) 7.2
68196931 Antisense, RP_041116_01_F10, Mouse strain C57BL/6J (56 days, male) 1.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.