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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:314.6 nTPM
GTEx:319.0 nTPM
FANTOM5:379.3 Scaled Tags Per Million
Pig:53.6 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 314.6
Sample id Sample description nTPM
Putamen
nTPM: 314.6
2647 Male, age 75, left hemisphere 393.3
2489 Female, age 72, unknown 348.7
1829 Male, age 74, unknown 324.3
2482 Female, age 94, left hemisphere 301.9
2466 Female, age 79, unknown 289.9
1937 Female, age 91, right hemisphere 288.7
1838 Male, age 80, right hemisphere 255.4

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 319.0
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 319.0
Samples: 205

Max nTPM: 1039.0
Min nTPM: 127.3
Std nTPM: 153.4
Median nTPM: 279.7
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 1039.0
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 966.6
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 856.5
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 788.1
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 723.7
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 710.7
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 695.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 632.4
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 621.2
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 614.9
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 604.6
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 590.5
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 584.0
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 574.5
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 566.5
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 563.9
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 556.3
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 547.2
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 540.5
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 509.7
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 508.7
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 505.8
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 498.6
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 496.0
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 487.4
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 484.9
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 484.7
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 480.1
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 471.7
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 468.5
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 466.4
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 465.1
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 461.8
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 460.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 457.4
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 450.0
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 443.5
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 440.4
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 433.7
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 425.6
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 422.2
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 420.3
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 415.8
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 410.6
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 405.4
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 401.1
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 398.2
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 392.2
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 389.4
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 387.0
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 386.4
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 383.4
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 382.9
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 369.6
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 369.5
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 367.1
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 366.8
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 363.1
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 363.0
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 362.9
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 361.5
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 360.4
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 358.4
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 358.1
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 355.9
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 353.2
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 347.7
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 344.0
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 341.3
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 336.7
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 335.5
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 335.1
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 334.1
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 333.6
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 332.0
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 329.7
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 324.5
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 324.2
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 319.3
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 319.2
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 314.4
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 306.3
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 304.0
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 302.1
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 301.4
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 300.4
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 300.1
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 299.5
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 298.9
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 298.0
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 296.6
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 296.1
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 293.7
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 293.5
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 291.7
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 290.9
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 289.2
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 287.4
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 284.2
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 284.0
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 282.2
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 280.3
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 279.7
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 278.0
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 277.5
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 277.1
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 277.0
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 275.2
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 269.5
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 269.3
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 268.5
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 268.3
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 266.7
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 265.2
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 265.0
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 264.6
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 264.2
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 264.0
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 263.7
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 263.6
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 261.6
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 260.7
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 260.6
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 257.1
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 256.8
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 256.4
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 255.8
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 254.8
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 253.9
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 252.9
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 251.5
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 250.2
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 248.2
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 247.1
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 246.6
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 246.2
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 243.6
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 242.4
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 241.1
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 237.6
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 237.3
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 236.6
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 236.2
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 235.1
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 235.1
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 235.0
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 229.1
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 228.8
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 228.0
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 226.6
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 223.8
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 223.5
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 217.3
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 216.2
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 212.0
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 209.0
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 208.2
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 205.8
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 204.9
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 203.3
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 202.9
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 202.2
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 201.0
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 193.6
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 193.5
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 190.3
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 189.5
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 188.5
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 188.2
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 188.1
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 184.5
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 183.8
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 181.8
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 181.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 180.5
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 171.3
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 171.1
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 169.7
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 169.5
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 167.6
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 167.4
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 163.7
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 163.2
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 161.0
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 159.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 156.4
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 154.8
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 151.5
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 150.7
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 149.9
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 146.9
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 143.2
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 141.7
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 141.6
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 139.0
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 138.9
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 137.7
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 136.6
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 135.3
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 132.4
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 132.0
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 131.6
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 131.3
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 128.8
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 127.3
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 379.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 379.3
FF:10176-103C5 60 years, female 379.3

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 53.6
Pig sample Sample description nTPM
Putamen
nTPM: 53.6
Samples: 4

Max nTPM: 67.0
Min nTPM: 37.4
Sample A Female 67.0
Sample B Female 37.4
Sample C Male 51.0
Sample D Male 59.0

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