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HSP90AA1
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  • HSP90AA1
BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:1351.6 nTPM
HPA:1351.6 nTPM
FANTOM5:2327.8 Scaled Tags Per Million
Pig:791.7 nTPM
Allen mouse:14.1 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 1351.6
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 1216.1
1984 Male, age 76, both hemispheres 1262.3
2188 Female, age 91, both hemispheres 1245.3
2090 Male, age 80, both hemispheres 1187.3
2301 Female, age 85, both hemispheres 1169.7
Dorsal cochlear nucleus
nTPM: 1187.8
2187 Female, age 91, both hemispheres 1241.8
2802 Male, age 74, right hemisphere 1204.5
2370 Male, age 61, both hemispheres 1187.3
2378 Male, age 80, both hemispheres 1171.9
2058 Male, age 76, both hemispheres 1133.3
Dorsal tegmental nucleus
nTPM: 1210.8
2083 Male, age 80, both hemispheres 1240.6
2358 Male, age 61, both hemispheres 1236.0
2326 Male, age 74, both hemispheres 1228.7
1936 Male, age 76, left hemisphere 1137.7
Dorsolateral tegmental area
nTPM: 1212.2
2751 Female, age 85, both hemispheres 1265.6
2654 Male, age 80, both hemispheres 1237.1
2360 Male, age 74, both hemispheres 1221.1
2337 Male, age 61, both hemispheres 1179.6
2141 Male, age 76, both hemispheres 1157.3
Kolliker-Fuse nucleus
nTPM: 1206.2
2163 Male, age 80, both hemispheres 1255.1
2793 Female, age 91, left hemisphere 1237.5
2315 Male, age 76, right hemisphere 1126.1
Lateral lemniscal nuclei
nTPM: 1213.9
2169 Male, age 76, both hemispheres 1287.3
2746 Female, age 85, left hemisphere 1220.1
2036 Male, age 80, both hemispheres 1203.0
2320 Female, age 91, left hemisphere 1179.8
2453 Male, age 74, right hemisphere 1179.3
Lateral parabrachial nucleus
nTPM: 1197.7
2139 Female, age 85, right hemisphere 1279.3
2013 Male, age 80, both hemispheres 1212.0
2790 Male, age 61, both hemispheres 1161.2
2792 Male, age 76, both hemispheres 1138.4
Lateral vestibular nucleus
nTPM: 1227.0
2184 Male, age 76, both hemispheres 1230.9
2311 Male, age 80, both hemispheres 1223.1
Locus coeruleus
nTPM: 1351.6
2014 Male, age 55, unknown 1527.7
2788 Male, age 74, unknown 1451.9
2123 Female, age 91, both hemispheres 1421.4
2317 Female, age 72, unknown 1308.4
2720 Male, age 74, both hemispheres 1306.0
1980 Male, age 76, both hemispheres 1234.0
2162 Male, age 80, both hemispheres 1211.6
Medial olivary nucleus
nTPM: 1217.2
1943 Male, age 61, both hemispheres 1317.7
2138 Female, age 91, both hemispheres 1249.8
2851 Male, age 80, both hemispheres 1193.7
1962 Male, age 76, both hemispheres 1107.5
Medial parabrachial nucleus
nTPM: 1230.5
2170 Female, age 91, both hemispheres 1281.7
2854 Male, age 80, both hemispheres 1267.3
2463 Female, age 85, right hemisphere 1267.2
2156 Male, age 61, both hemispheres 1177.3
2786 Male, age 76, both hemispheres 1158.8
Medial periolivary nuclei
nTPM: 1243.9
2171 Female, age 85, both hemispheres 1388.4
2063 Male, age 76, both hemispheres 1261.3
2791 Male, age 74, right hemisphere 1246.5
2081 Male, age 80, both hemispheres 1170.8
2458 Female, age 91, both hemispheres 1152.6
Motor facial nucleus
nTPM: 1214.0
2062 Male, age 76, both hemispheres 1271.6
2697 Female, age 85, both hemispheres 1252.2
2365 Male, age 74, right hemisphere 1238.7
2795 Female, age 91, both hemispheres 1183.4
2126 Male, age 61, both hemispheres 1174.8
2327 Male, age 80, both hemispheres 1163.1
Motor trigeminal nucleus
nTPM: 1171.1
2079 Male, age 80, both hemispheres 1197.2
2560 Male, age 74, both hemispheres 1183.8
2335 Male, age 61, both hemispheres 1171.2
2321 Female, age 91, both hemispheres 1158.9
2309 Male, age 76, both hemispheres 1144.4
Nuclei of the trapezoid body
nTPM: 1216.7
2735 Female, age 85, both hemispheres 1316.0
1983 Male, age 76, both hemispheres 1246.7
2166 Male, age 80, both hemispheres 1192.8
2159 Male, age 61, both hemispheres 1174.9
2368 Female, age 91, both hemispheres 1153.0
Paramedian reticular nucleus
nTPM: 1270.7
2050 Female, age 85, both hemispheres 1399.2
2057 Male, age 80, both hemispheres 1248.7
2313 Male, age 61, both hemispheres 1218.0
2052 Male, age 76, both hemispheres 1217.1
Pontine nuclei
nTPM: 1263.2
1863 Male, age 55, unknown 1406.3
2109 Female, age 72, unknown 1331.2
2787 Female, age 85, both hemispheres 1325.9
2454 Male, age 74, left hemisphere 1291.9
2319 Female, age 91, both hemispheres 1225.0
2727 Male, age 61, right hemisphere 1205.9
1968 Male, age 76, left hemisphere 1186.3
2115 Male, age 80, left hemisphere 1133.0
Pontine raphe nucleus
nTPM: 1296.5
2122 Female, age 85, midline 1339.2
2853 Male, age 76, midline 1253.8
Posteroventral cochlear nucleus
nTPM: 1226.7
2752 Female, age 85, both hemispheres 1279.1
2135 Female, age 91, both hemispheres 1252.1
2371 Male, age 61, both hemispheres 1241.6
2341 Male, age 80, both hemispheres 1228.3
2070 Male, age 76, both hemispheres 1132.4
Principal sensory trigeminal nucleus
nTPM: 1206.0
2008 Male, age 80, left hemisphere 1241.4
2367 Female, age 91, left hemisphere 1211.9
2324 Male, age 76, both hemispheres 1199.6
2158 Male, age 61, both hemispheres 1171.2
Reticular pontine nucleus, caudal
nTPM: 1196.9
2559 Male, age 74, both hemispheres 1216.6
2092 Male, age 76, both hemispheres 1199.7
2457 Female, age 91, both hemispheres 1193.6
2332 Male, age 80, right hemisphere 1177.8
Reticular pontine nucleus, oral
nTPM: 1255.6
2012 Female, age 85, both hemispheres 1325.3
2361 Male, age 74, both hemispheres 1280.6
1939 Male, age 80, both hemispheres 1270.6
2366 Female, age 91, both hemispheres 1209.8
2167 Male, age 76, both hemispheres 1191.5
Reticulotegmental nucleus
nTPM: 1215.8
2325 Male, age 76, both hemispheres 1265.0
2322 Female, age 91, both hemispheres 1213.9
2333 Male, age 80, both hemispheres 1195.9
2452 Male, age 74, both hemispheres 1188.5
Spinal trigeminal nucleus, oral
nTPM: 1190.6
2737 Female, age 85, both hemispheres 1252.0
2164 Male, age 80, both hemispheres 1210.6
1978 Male, age 76, both hemispheres 1109.3
Subcoeruleus area
nTPM: 1201.9
1958 Male, age 80, both hemispheres 1253.1
2323 Female, age 91, left hemisphere 1233.4
2369 Female, age 85, left hemisphere 1215.1
2451 Male, age 74, both hemispheres 1164.3
2089 Male, age 76, left hemisphere 1143.9
Superior olive
nTPM: 1228.4
1875 Female, age 85, both hemispheres 1338.6
2364 Male, age 74, right hemisphere 1265.7
2020 Male, age 76, both hemispheres 1204.2
2329 Male, age 80, right hemisphere 1177.0
2561 Female, age 91, both hemispheres 1156.5
Superior vestibular nucleus
nTPM: 1255.2
2383 Male, age 74, both hemispheres 1343.9
2015 Male, age 80, both hemispheres 1291.0
2061 Male, age 76, both hemispheres 1130.8
Ventral periolivary nuclei
nTPM: 1228.1
2130 Female, age 85, both hemispheres 1319.4
2165 Male, age 80, both hemispheres 1239.8
2023 Male, age 76, both hemispheres 1212.1
2794 Female, age 91, left hemisphere 1141.1
Ventrolateral tegmental area, A5 NE cell group
nTPM: 1224.9
2359 Male, age 61, both hemispheres 1317.4
2840 Female, age 85, both hemispheres 1301.9
2449 Male, age 74, both hemispheres 1218.4
2161 Male, age 80, both hemispheres 1190.7
1959 Male, age 76, both hemispheres 1171.2
2456 Female, age 91, both hemispheres 1149.8

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 2327.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 1783.0
FF:10165-103B3 76 years, female 1896.7
FF:10182-103D2 60 years, female 1669.3
Pons
Scaled Tags Per Million: 2327.8
FF:10033-101E6 18-54 years, mixed 2327.8

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 791.7
Pig sample Sample description nTPM
Pons
nTPM: 791.8
Samples: 4

Max nTPM: 865.8
Min nTPM: 662.7
Sample A Female 814.4
Sample B Female 662.7
Sample C Male 824.1
Sample D Male 865.8

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 14.1
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 14.1
69012681 Antisense, RP_050309_01_C05, Mouse strain C57BL/6J (56 days, male) 14.1

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.