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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1274.3 nTPM
HPA:1274.3 nTPM
FANTOM5:2128.0 Scaled Tags Per Million
Pig:746.8 nTPM
Mouse:942.0 nTPM
Allen mouse:18.6 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 1274.3
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 1224.0
2032 Female, age 42, unknown 1252.4
2396 Male, age 61, right hemisphere 1243.0
2497 Male, age 66, unknown 1176.7
Centromedial thalamic nucleus
nTPM: 1152.6
2401 Male, age 76, right hemisphere 1271.2
2279 Female, age 85, left hemisphere 1034.0
Habenula
nTPM: 1243.4
1957 Male, age 80, both hemispheres 1368.8
2203 Male, age 61, left hemisphere 1287.7
2252 Male, age 62, unknown 1176.9
2276 Male, age 66, unknown 1140.1
Lateral geniculate body
nTPM: 1274.3
2106 Female, age 67, right hemisphere 1392.1
1953 Male, age 62, unknown 1365.8
2575 Female, age 94, right hemisphere 1315.8
2035 Female, age 72, unknown 1304.2
2399 Male, age 61, left hemisphere 1273.4
2841 Male, age 80, both hemispheres 1215.6
2659 Male, age 66, unknown 1165.9
2857 Male, age 74, right hemisphere 1161.4
Lateral thalamic nuclei
nTPM: 1227.6
2573 Female, age 94, left hemisphere 1295.0
2765 Female, age 67, both hemispheres 1289.3
1903 Male, age 76, left hemisphere 1256.0
2577 Male, age 74, both hemispheres 1173.0
2661 Female, age 72, unknown 1124.7
Medial dorsal thalamic nucleus
nTPM: 1221.8
2572 Female, age 94, right hemisphere 1381.2
2498 Male, age 66, unknown 1261.9
2283 Male, age 80, right hemisphere 1252.7
1859 Male, age 76, both hemispheres 1251.7
2026 Male, age 62, unknown 1245.0
1810 Male, age 48, unknown 1233.4
1930 Female, age 42, unknown 1223.8
2039 Female, age 72, unknown 1209.1
1971 Male, age 61, right hemisphere 1205.1
2402 Female, age 67, both hemispheres 1181.5
2576 Male, age 74, both hemispheres 1179.4
2492 Male, age 75, right hemisphere 1144.1
2660 Female, age 72, unknown 1114.3
Medial geniculate body
nTPM: 1186.0
1811 Female, age 42, unknown 1273.1
2650 Female, age 94, left hemisphere 1248.4
2207 Male, age 80, right hemisphere 1208.1
2657 Male, age 74, right hemisphere 1161.2
2217 Female, age 72, unknown 1158.7
2571 Male, age 75, right hemisphere 1150.4
2049 Male, age 76, both hemispheres 1101.9
Nucleus reuniens
nTPM: 1183.6
2212 Female, age 67, left hemisphere 1274.0
2205 Male, age 80, left hemisphere 1163.3
2210 Female, age 85, left hemisphere 1113.7
Nucleus rhomboideus
nTPM: 1160.8
2206 Male, age 80, both hemispheres 1268.3
2213 Female, age 67, left hemisphere 1122.6
2280 Female, age 85, left hemisphere 1091.4
Posterior thalamic nucleus
nTPM: 1226.0
2649 Female, age 94, both hemispheres 1358.0
2266 Male, age 76, right hemisphere 1259.4
2655 Male, age 74, right hemisphere 1153.0
2495 Female, age 67, right hemisphere 1133.6
Pulvinar
nTPM: 1232.8
1972 Male, age 62, unknown 1343.1
1932 Male, age 80, right hemisphere 1290.1
2398 Male, age 61, left hemisphere 1268.2
1929 Male, age 48, unknown 1240.3
1899 Female, age 42, unknown 1232.4
2214 Male, age 76, right hemisphere 1229.8
2496 Female, age 67, right hemisphere 1201.5
2724 Male, age 74, right hemisphere 1185.7
2499 Male, age 66, unknown 1176.5
2582 Female, age 72, unknown 1160.3
Subthalamic nucleus
nTPM: 1209.0
2406 Female, age 72, unknown 1314.0
2275 Male, age 66, unknown 1273.4
2282 Male, age 61, both hemispheres 1255.9
2124 Male, age 62, unknown 1219.2
2658 Male, age 74, both hemispheres 1212.7
2779 Female, age 42, unknown 1178.2
2056 Female, age 72, unknown 1123.2
2216 Male, age 48, unknown 1095.0
Ventral posterolateral thalamic nucleus
nTPM: 1186.0
2397 Male, age 61, right hemisphere 1255.9
2740 Male, age 76, right hemisphere 1248.7
2197 Male, age 80, both hemispheres 1234.7
2578 Male, age 74, both hemispheres 1190.6
2570 Male, age 75, right hemisphere 1130.5
2581 Female, age 72, unknown 1055.5
Ventral posteromedial thalamic nucleus
nTPM: 1192.6
2202 Male, age 61, left hemisphere 1247.1
2653 Male, age 74, both hemispheres 1208.4
2758 Male, age 80, both hemispheres 1199.5
2127 Male, age 76, right hemisphere 1173.3
2281 Male, age 75, right hemisphere 1134.8
Ventral thalamic nuclei
nTPM: 1206.4
1845 Male, age 48, unknown 1320.7
1860 Male, age 76, both hemispheres 1307.1
1912 Female, age 42, unknown 1217.4
2580 Male, age 66, unknown 1209.0
2285 Male, age 62, unknown 1181.5
2204 Male, age 80, both hemispheres 1180.7
2652 Male, age 74, left hemisphere 1177.3
2291 Female, age 72, unknown 1142.6
2858 Female, age 72, unknown 1121.3
Ventromedial nucleus
nTPM: 1128.0
1982 Female, age 72, unknown 1133.4
1822 Female, age 42, unknown 1122.6
Zona incerta
nTPM: 1179.9
2215 Male, age 66, unknown 1273.4
2822 Male, age 74, right hemisphere 1218.7
2208 Male, age 80, right hemisphere 1170.7
2403 Male, age 62, unknown 1139.9
2663 Female, age 72, unknown 1096.9

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 2128.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 2128.0
FF:10154-103A1 76 years, female 2128.0

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 746.8
Pig sample Sample description nTPM
Thalamus
nTPM: 746.8
Samples: 4

Max nTPM: 869.5
Min nTPM: 550.3
Sample A Female 869.5
Sample B Female 550.3
Sample C Male 706.0
Sample D Male 861.3

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 942.0
Mouse sample Sample description nTPM
Thalamus
nTPM: 942.0
Samples: 4

Max nTPM: 1023.2
Min nTPM: 854.6
Sample A Male 854.6
Sample B Male 1023.2
Sample C Female 887.0
Sample D Female 1003.1

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 18.6
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 18.6
69012681 Antisense, RP_050309_01_C05, Mouse strain C57BL/6J (56 days, male) 18.6

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