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BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:6497.7 nTPM
HPA:6497.7 nTPM
GTEx:3499.9 nTPM
FANTOM5:1390.8 Scaled Tags Per Million
Pig:390.3 nTPM
Mouse:522.9 nTPM

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA041602Antibody CAB020769
Glial cells MediumHigh
Neuronal cells LowMedium




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 6497.7
Sample id Sample description nTPM
Hippocampus
nTPM: 6497.7
1855 Male, age 76, left hemisphere 6662.5
2529 Female, age 94, left hemisphere 6562.4
2621 Female, age 67, right hemisphere 6494.9
1898 Male, age 80, left hemisphere 6492.5
1911 Female, age 85, right hemisphere 6423.8
2148 Female, age 91, left hemisphere 6350.0
Dentate gyrus
nTPM: 6418.9
2010 Male, age 76, both hemispheres 6635.3
2530 Female, age 94, left hemisphere 6544.4
2531 Female, age 67, both hemispheres 6388.9
2246 Female, age 85, both hemispheres 6369.3
2528 Male, age 74, both hemispheres 6357.8
1927 Female, age 91, both hemispheres 6217.6
Entorhinal gyrus
nTPM: 6434.0
1787 Male, age 76, left hemisphere 6584.4
2117 Female, age 91, right hemisphere 6556.8
2686 Male, age 75, right hemisphere 6532.6
2764 Male, age 80, right hemisphere 6401.0
1938 Female, age 85, left hemisphere 6275.0
2613 Female, age 94, left hemisphere 6254.3
Hippocampus, CA1
nTPM: 6391.0
2082 Female, age 91, right hemisphere 6464.8
2527 Male, age 74, both hemispheres 6463.0
2749 Male, age 80, left hemisphere 6380.6
2045 Male, age 76, both hemispheres 6373.3
1873 Female, age 85, both hemispheres 6273.2
Hippocampus, CA2
nTPM: 6407.6
2113 Female, age 91, right hemisphere 6498.1
1963 Male, age 80, left hemisphere 6433.4
1940 Female, age 85, left hemisphere 6411.6
2249 Male, age 74, both hemispheres 6400.4
2437 Female, age 94, left hemisphere 6374.9
1892 Male, age 76, both hemispheres 6326.9
Hippocampus, CA3
nTPM: 6356.0
1867 Male, age 76, both hemispheres 6507.0
2137 Male, age 80, left hemisphere 6454.5
2861 Female, age 67, both hemispheres 6382.9
1891 Female, age 85, both hemispheres 6319.6
2436 Male, age 74, both hemispheres 6289.5
2620 Female, age 94, left hemisphere 6182.7
Parahippocampal cortex
nTPM: 6421.6
2018 Male, age 76, both hemispheres 6754.6
2532 Female, age 72, left hemisphere 6537.2
2245 Female, age 91, both hemispheres 6508.4
2250 Female, age 67, right hemisphere 6442.2
2622 Female, age 67, right hemisphere 6429.8
2692 Male, age 74, both hemispheres 6417.4
1850 Male, age 80, both hemispheres 6324.0
1990 Female, age 91, right hemisphere 6284.3
1933 Female, age 85, both hemispheres 6283.9
2693 Female, age 94, both hemispheres 6234.4
Perirhinal gyrus
nTPM: 6331.5
2848 Male, age 76, right hemisphere 6368.8
1794 Male, age 80, right hemisphere 6343.8
2521 Female, age 94, right hemisphere 6338.6
1841 Female, age 85, right hemisphere 6337.3
1847 Female, age 91, left hemisphere 6269.0
Subiculum
nTPM: 6484.2
2042 Male, age 76, both hemispheres 6878.2
1901 Male, age 80, both hemispheres 6490.0
2619 Male, age 74, both hemispheres 6424.8
1977 Female, age 85, both hemispheres 6392.2
2729 Female, age 91, right hemisphere 6376.0
2438 Female, age 94, left hemisphere 6344.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 3499.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 3499.9
Samples: 197

Max nTPM: 9071.3
Min nTPM: 1060.3
Std nTPM: 1327.2
Median nTPM: 3138.1
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 9071.3
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 7878.0
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 6602.8
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 6573.2
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 6457.8
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 6409.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 6402.0
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 6289.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 6277.4
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 6198.0
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 6073.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 6072.7
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 5877.7
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 5782.3
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 5640.5
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 5573.5
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 5453.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 5413.4
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 5326.2
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 5291.9
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 5201.4
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 5199.1
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 5128.3
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 5067.1
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 5034.7
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 5032.5
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 5015.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 4980.6
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 4955.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 4924.0
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 4911.5
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 4907.1
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 4874.0
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 4871.4
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 4840.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 4829.2
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 4727.1
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 4706.6
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 4696.4
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 4683.8
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 4601.9
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 4561.3
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 4547.9
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 4543.0
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 4522.4
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 4520.6
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 4473.2
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 4443.8
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 4427.3
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 4329.9
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 4283.1
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 4253.9
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 4200.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 4181.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 4140.7
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 4090.4
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 4077.0
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 4069.9
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 4019.5
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 4007.6
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 3973.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 3927.5
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 3919.3
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 3896.8
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 3881.5
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 3867.2
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 3824.0
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 3821.1
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 3729.3
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 3725.1
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 3723.3
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 3723.1
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 3697.8
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 3691.6
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 3691.4
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 3685.1
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 3652.6
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 3647.8
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 3646.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 3577.4
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 3546.3
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 3492.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 3492.0
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 3472.4
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 3378.2
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 3360.7
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 3360.5
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 3360.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 3346.0
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 3342.8
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 3340.8
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 3289.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 3287.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 3268.3
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 3257.0
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 3235.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 3229.3
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 3211.4
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 3138.1
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 3138.1
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 3136.0
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 3102.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 3101.5
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 3085.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 3071.2
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 3062.6
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 3056.4
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 3051.8
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 3031.1
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 3019.2
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 2988.8
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 2980.3
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 2952.6
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 2923.8
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 2920.3
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 2916.9
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 2913.5
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 2896.7
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 2885.0
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 2829.0
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 2822.5
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 2812.2
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 2809.9
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 2806.8
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 2804.7
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 2801.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 2791.1
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 2789.2
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 2740.1
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 2731.2
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 2729.6
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 2711.5
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 2676.9
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 2674.5
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 2673.5
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 2670.7
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 2659.1
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 2654.0
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 2640.4
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 2611.7
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 2605.6
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 2600.0
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 2587.3
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 2586.0
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 2585.8
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 2573.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 2570.0
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 2551.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 2545.6
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 2530.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 2498.6
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 2442.2
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 2420.5
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 2410.9
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 2407.0
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 2406.6
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 2392.3
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 2390.1
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 2335.6
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 2322.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 2307.2
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 2300.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 2289.2
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 2278.9
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 2278.2
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 2276.3
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 2259.1
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 2254.3
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 2237.6
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 2215.6
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 2200.5
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 2185.8
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 2142.0
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 2124.9
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 2122.9
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 2115.0
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 2107.6
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 2065.7
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 2063.0
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 2033.9
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 1978.2
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 1963.2
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 1949.1
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 1944.0
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 1898.8
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 1863.6
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 1849.5
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 1813.7
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 1812.5
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 1808.5
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 1794.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 1768.5
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 1758.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 1621.1
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 1569.3
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 1470.0
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 1060.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1390.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 1390.8
FF:10153-102I9 76 years, female 1508.2
FF:10169-103B7 60 years, female 1273.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 390.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 390.3
Samples: 4

Max nTPM: 589.7
Min nTPM: 205.0
Sample A Female 589.7
Sample B Female 296.2
Sample C Male 470.3
Sample D Male 205.0
Entorhinal cortex
nTPM: 316.8
Samples: 4

Max nTPM: 383.9
Min nTPM: 220.8
Sample A Female 289.6
Sample B Female 373.0
Sample C Male 383.9
Sample D Male 220.8
Subiculum
nTPM: 284.6
Samples: 4

Max nTPM: 372.0
Min nTPM: 224.8
Sample A Female 372.0
Sample B Female 263.7
Sample C Male 224.8
Sample D Male 278.0
Ventral hippocampus
nTPM: 292.1
Samples: 4

Max nTPM: 351.8
Min nTPM: 212.8
Sample A Female 300.4
Sample B Female 212.8
Sample C Male 351.8
Sample D Male 303.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 522.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 522.9
Samples: 4

Max nTPM: 545.0
Min nTPM: 500.1
Sample A Male 531.3
Sample B Male 515.3
Sample C Female 545.0
Sample D Female 500.1
Hippocampal formation
nTPM: 507.7
Samples: 4

Max nTPM: 599.6
Min nTPM: 449.7
Sample A Male 526.6
Sample B Male 454.9
Sample C Female 449.7
Sample D Female 599.6

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