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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:6806.2 nTPM
HPA:6806.2 nTPM
GTEx:4685.5 nTPM
FANTOM5:1807.9 Scaled Tags Per Million
Pig:287.9 nTPM
Mouse:685.6 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 6806.2
Sample id Sample description nTPM
Amygdala
nTPM: 6719.9
2514 Male, age 75, right hemisphere 6862.8
2695 Female, age 67, right hemisphere 6730.8
1987 Female, age 91, left hemisphere 6715.9
2517 Female, age 94, left hemisphere 6712.8
2814 Male, age 76, right hemisphere 6577.1
Basal amygdala
nTPM: 6607.4
2609 Male, age 75, right hemisphere 6863.1
2827 Female, age 67, right hemisphere 6643.1
2243 Female, age 91, right hemisphere 6625.9
2110 Male, age 80, left hemisphere 6602.5
1955 Male, age 76, both hemispheres 6469.0
2685 Female, age 94, left hemisphere 6440.5
Central amygdala
nTPM: 6806.2
2515 Male, age 75, right hemisphere 7361.4
2826 Female, age 94, left hemisphere 6998.8
2239 Male, age 80, left hemisphere 6621.5
1905 Male, age 76, both hemispheres 6554.3
2701 Female, age 91, right hemisphere 6495.0
Corticomedial amygdala
nTPM: 6629.9
2428 Male, age 75, right hemisphere 7103.7
2240 Male, age 76, both hemispheres 6604.0
2242 Female, age 91, right hemisphere 6561.6
2829 Male, age 80, left hemisphere 6555.7
2535 Female, age 67, right hemisphere 6542.8
2429 Female, age 94, left hemisphere 6411.6
Lateral amygdala
nTPM: 6717.8
2830 Female, age 67, right hemisphere 6895.6
2516 Male, age 75, right hemisphere 6863.5
2256 Male, age 80, left hemisphere 6862.2
2534 Female, age 94, left hemisphere 6686.1
2255 Female, age 91, right hemisphere 6550.3
1883 Male, age 76, both hemispheres 6449.0
Stria terminalis, bed nucleus
nTPM: 6311.2
1974 Female, age 91, both hemispheres 6347.2
2486 Female, age 94, both hemispheres 6303.3
2201 Male, age 74, unknown 6283.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 4685.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 4685.5
Samples: 152

Max nTPM: 15022.6
Min nTPM: 1760.9
Std nTPM: 1939.1
Median nTPM: 4296.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 15022.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 12993.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 9413.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 9363.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 8901.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 8797.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 8616.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 8579.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 8110.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 7691.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 7505.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 7244.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 7094.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 7070.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 6918.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 6888.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 6879.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 6800.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 6763.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 6730.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 6651.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 6559.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 6290.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 6276.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 6121.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 6111.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 5960.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 5951.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 5844.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 5767.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 5762.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 5737.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 5706.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 5682.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 5653.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 5651.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 5540.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 5439.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 5400.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 5368.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 5365.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 5346.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 5345.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 5306.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 5284.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 5283.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 5277.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 5245.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 5225.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 5154.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 5148.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 5134.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 5106.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 5075.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 5064.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 5051.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 5045.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 5033.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 4951.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 4862.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 4853.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 4768.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 4737.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 4672.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 4604.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 4531.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 4478.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 4474.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 4451.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 4451.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 4420.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 4417.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 4416.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 4399.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 4371.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 4305.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 4286.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 4286.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 4273.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 4268.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 4204.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 4175.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 4171.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 4167.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 4118.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 4115.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 4091.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 4084.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 4083.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 4028.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 3995.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 3987.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 3973.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 3953.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 3923.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 3908.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 3833.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 3822.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 3731.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 3727.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 3705.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 3670.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 3657.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 3652.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 3635.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 3616.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 3537.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 3499.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 3455.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 3445.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 3439.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 3419.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 3396.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 3329.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 3310.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 3276.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 3263.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 3254.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 3249.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 3213.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 3179.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 3092.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 3042.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 3035.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 2978.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 2976.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 2963.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 2959.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 2945.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 2919.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 2915.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 2906.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 2886.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 2817.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 2770.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 2765.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 2765.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 2761.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 2731.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 2659.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 2600.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 2553.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 2526.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 2426.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 2392.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 2353.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 2297.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 2242.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 2109.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 2108.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 1996.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 1760.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1807.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1807.9
FF:10151-102I7 76 years, female 1807.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 287.9
Pig sample Sample description nTPM
Amygdala
nTPM: 287.9
Samples: 4

Max nTPM: 340.9
Min nTPM: 182.3
Sample A Female 340.9
Sample B Female 337.0
Sample C Male 291.3
Sample D Male 182.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 685.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 685.6
Samples: 4

Max nTPM: 789.2
Min nTPM: 591.4
Sample A Male 591.4
Sample B Male 667.3
Sample C Female 789.2
Sample D Female 694.6

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