We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
FTL
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • FTL
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:7149.5 nTPM
HPA:7149.5 nTPM
GTEx:6177.4 nTPM
FANTOM5:2474.2 Scaled Tags Per Million
Pig:1298.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 7149.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 6779.3
1981 Female, age 72, midline 7015.5
2565 Male, age 75, midline 6853.3
2048 Male, age 55, midline 6712.0
2194 Female, age 79, both hemispheres 6670.4
2816 Male, age 47, midline 6645.3
Cervical spinal cord, dorsal horn
nTPM: 6742.2
2173 Female, age 72, unknown 7169.8
2296 Male, age 66, both hemispheres 6909.3
2069 Male, age 47, both hemispheres 6867.0
1877 Male, age 55, unknown 6791.1
2721 Male, age 90, both hemispheres 6425.2
2297 Male, age 75, both hemispheres 6290.9
Cervical spinal cord, ventral horn
nTPM: 7149.5
2098 Female, age 72, unknown 7699.5
2809 Male, age 90, both hemispheres 7608.4
2480 Male, age 75, both hemispheres 7161.8
2295 Male, age 66, both hemispheres 7043.9
2068 Male, age 55, unknown 6827.3
2820 Female, age 79, both hemispheres 6555.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 6177.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 6177.4
Samples: 159

Max nTPM: 35934.0
Min nTPM: 1631.2
Std nTPM: 3201.9
Median nTPM: 5766.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 35934.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 12612.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 12131.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 12088.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 12013.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 11538.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 10988.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 10598.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 10303.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 9885.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 9779.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 9425.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 9338.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 9301.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 9171.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 9151.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 8955.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 8945.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 8834.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 8821.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 8737.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 8628.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 8223.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 8162.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 8144.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 8122.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 8099.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 8005.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 7976.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 7952.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 7793.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 7714.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 7711.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 7631.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 7611.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 7510.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 7470.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 7372.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 7129.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 7088.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 6989.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 6981.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 6861.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 6791.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 6771.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 6736.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 6688.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 6681.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 6675.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 6633.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 6567.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 6558.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 6523.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 6508.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 6507.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 6482.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 6343.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 6329.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 6290.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 6285.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 6261.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 6233.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 6230.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 6154.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 6126.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 6030.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 6025.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 5996.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 5978.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 5967.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 5963.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 5959.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 5956.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 5951.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 5878.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 5878.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 5855.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 5779.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 5777.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 5766.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 5761.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 5756.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 5739.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 5687.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 5686.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 5680.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 5586.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 5585.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 5575.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 5571.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 5561.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 5471.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 5464.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 5434.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 5412.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 5412.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 5278.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 5275.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 5141.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 5106.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 5103.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 5094.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 5036.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 4924.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 4857.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 4853.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 4842.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 4829.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 4828.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 4827.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 4818.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 4743.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 4736.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 4696.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 4657.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 4587.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 4552.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 4550.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 4472.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 4454.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 4393.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 4370.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 4330.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 4295.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 4282.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 4231.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 4199.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 4184.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 4163.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 4135.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 4108.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 4047.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 3905.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 3873.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 3870.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 3769.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 3751.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 3715.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 3711.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 3661.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 3649.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 3516.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 3514.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 3407.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 3402.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 3336.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 3325.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 3253.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 3205.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 3196.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 3103.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 2964.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 2761.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 2731.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 2644.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 2501.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 2391.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 2136.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 1631.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 2474.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 2474.2
FF:10181-103D1 60 years, female 2926.1
FF:10159-103A6 76 years, female 2022.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1298.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 1190.5
Samples: 4

Max nTPM: 1678.2
Min nTPM: 909.0
Sample A Female 940.6
Sample B Female 1234.0
Sample C Male 1678.2
Sample D Male 909.0
Ventral spinal cord
nTPM: 1298.3
Samples: 4

Max nTPM: 1371.7
Min nTPM: 1194.1
Sample A Female 1194.1
Sample B Female 1301.7
Sample C Male 1325.8
Sample D Male 1371.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.