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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:7250.8 nTPM
HPA:7250.8 nTPM
FANTOM5:1711.9 Scaled Tags Per Million
Pig:896.5 nTPM

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max nTPM 7250.8
Sample id Sample description nTPM
Area postrema
nTPM: 7250.8
2799 Male, age 61, both hemispheres 8093.3
2306 Male, age 80, both hemispheres 7119.1
2054 Male, age 76, both hemispheres 6540.0
Cuneate nuclei
nTPM: 6672.6
2381 Male, age 80, both hemispheres 6845.9
2376 Male, age 61, both hemispheres 6600.7
2131 Male, age 76, both hemispheres 6571.1
Dorsal medullary reticular nucleus
nTPM: 6550.3
2088 Male, age 76, both hemispheres 6658.0
2373 Male, age 61, both hemispheres 6524.7
2040 Female, age 85, both hemispheres 6468.3
Dorsal motor vagal complex
nTPM: 6721.5
2807 Female, age 85, both hemispheres 6997.5
2643 Male, age 74, both hemispheres 6994.3
2797 Male, age 61, both hemispheres 6799.4
2185 Male, age 76, both hemispheres 6736.5
2813 Female, age 72, unknown 6592.3
2000 Male, age 74, unknown 6582.3
2844 Male, age 55, unknown 6573.3
2133 Female, age 91, both hemispheres 6496.5
Gigantocellular reticular nuclei, medullary
nTPM: 6547.0
2314 Male, age 61, both hemispheres 6686.7
2310 Male, age 80, both hemispheres 6619.4
2387 Female, age 91, both hemispheres 6559.2
2022 Male, age 76, right hemisphere 6502.6
1876 Female, age 85, both hemispheres 6467.8
2462 Male, age 74, both hemispheres 6446.4
Gigantocellular reticular nuclei, pars
nTPM: 6493.0
2084 Female, age 85, both hemispheres 6546.0
2336 Male, age 61, both hemispheres 6542.2
2706 Male, age 80, both hemispheres 6533.9
2330 Male, age 80, both hemispheres 6527.3
2168 Male, age 76, both hemispheres 6315.3
Inferior olive
nTPM: 6861.6
2379 Male, age 80, both hemispheres 6978.9
2628 Female, age 91, both hemispheres 6912.4
2085 Female, age 85, both hemispheres 6814.1
2178 Male, age 61, both hemispheres 6806.6
2563 Male, age 74, both hemispheres 6795.8
Lateral medullary reticular nucleus
nTPM: 6855.8
2852 Male, age 80, both hemispheres 7204.4
2305 Male, age 74, both hemispheres 6919.1
2190 Female, age 85, both hemispheres 6869.1
2804 Female, age 91, both hemispheres 6845.5
2374 Male, age 61, both hemispheres 6712.5
2044 Male, age 76, both hemispheres 6584.3
Medial vestibular nucleus
nTPM: 6626.2
2624 Male, age 61, both hemispheres 6989.0
2801 Male, age 74, both hemispheres 6690.8
2093 Male, age 80, both hemispheres 6591.5
2803 Female, age 91, both hemispheres 6589.1
2743 Female, age 85, both hemispheres 6464.5
2134 Male, age 76, both hemispheres 6432.0
Motor hypoglossal nucleus
nTPM: 6639.5
2182 Male, age 80, both hemispheres 7017.4
2132 Female, age 85, both hemispheres 6721.5
2125 Female, age 91, both hemispheres 6604.3
2277 Male, age 76, both hemispheres 6476.7
2461 Male, age 61, both hemispheres 6377.6
Nucleus ambiguus
nTPM: 6894.8
2071 Male, age 76, both hemispheres 7114.9
2096 Female, age 85, both hemispheres 6674.7
Nucleus cuneatus
nTPM: 6912.0
2808 Female, age 85, both hemispheres 7357.2
2380 Male, age 80, both hemispheres 7143.4
2805 Female, age 91, both hemispheres 6913.8
2564 Male, age 74, both hemispheres 6843.2
2100 Male, age 76, both hemispheres 6668.5
2562 Male, age 61, both hemispheres 6545.9
Nucleus gracilis
nTPM: 7154.6
2299 Female, age 85, both hemispheres 7436.5
2382 Male, age 80, both hemispheres 7075.9
2627 Male, age 74, both hemispheres 6951.5
Nucleus raphe magnus
nTPM: 6413.2
2051 Male, age 76, both hemispheres 6965.7
2459 Female, age 91, both hemispheres 6461.2
2328 Male, age 80, both hemispheres 6399.2
2455 Male, age 74, both hemispheres 6378.5
2172 Female, age 85, both hemispheres 6163.0
2160 Male, age 61, both hemispheres 6111.7
Nucleus raphe obscurus
nTPM: 7000.2
2142 Male, age 76, midline 7378.3
2845 Female, age 85, midline 6977.5
2800 Male, age 61, midline 6644.8
Nucleus raphe pallidus
nTPM: 7212.1
1924 Male, age 61, midline 7433.5
2145 Male, age 76, midline 7302.1
2183 Male, age 80, midline 6900.8
Nucleus tractus solitarii
nTPM: 6471.2
2191 Female, age 85, both hemispheres 6706.3
2307 Male, age 80, both hemispheres 6558.8
2656 Male, age 76, both hemispheres 6356.8
2144 Female, age 91, right hemisphere 6263.0
Parvicellular reticular nuclei
nTPM: 6691.0
2095 Male, age 76, both hemispheres 6826.0
2119 Male, age 80, both hemispheres 6811.5
2558 Male, age 74, both hemispheres 6435.5
Parvicellular reticular nuclei, medullary
nTPM: 6505.5
2091 Female, age 85, both hemispheres 6541.8
2181 Male, age 80, left hemisphere 6490.1
2189 Female, age 91, both hemispheres 6484.6
Peritrigeminal nucleus
nTPM: 7001.2
2067 Female, age 85, both hemispheres 7300.4
2136 Male, age 76, both hemispheres 7003.6
2179 Male, age 61, both hemispheres 6699.7
Prepositus hypoglossal nucleus
nTPM: 6664.6
2855 Female, age 85, right hemisphere 6698.3
2086 Male, age 80, both hemispheres 6631.0
Spinal trigeminal nucleus, caudal
nTPM: 6648.0
2308 Male, age 80, both hemispheres 6822.6
2642 Male, age 74, both hemispheres 6729.0
2447 Male, age 76, both hemispheres 6611.7
2312 Male, age 61, both hemispheres 6600.0
2390 Female, age 91, both hemispheres 6476.5
Spinal trigeminal nucleus, interpolar
nTPM: 6591.2
2625 Male, age 61, both hemispheres 6701.6
2033 Male, age 80, both hemispheres 6664.5
2386 Female, age 85, both hemispheres 6616.4
2066 Male, age 76, right hemisphere 6513.1
2389 Female, age 91, both hemispheres 6460.5
Spinal vestibular nucleus
nTPM: 6725.0
2796 Male, age 61, both hemispheres 6981.2
2384 Male, age 74, both hemispheres 6900.6
2806 Female, age 85, both hemispheres 6704.2
2780 Male, age 80, both hemispheres 6663.2
2748 Male, age 76, both hemispheres 6648.3
2186 Female, age 91, both hemispheres 6452.2
Ventral medullary reticular nucleus
nTPM: 6622.7
2372 Male, age 61, both hemispheres 6623.5
2060 Male, age 76, both hemispheres 6622.0
Ventrolateral medulla, A1-C1 cell groups
nTPM: 6812.8
2118 Male, age 80, both hemispheres 6997.4
2302 Female, age 91, both hemispheres 6864.3
1986 Male, age 76, both hemispheres 6852.7
2741 Female, age 85, both hemispheres 6685.5
2180 Male, age 61, both hemispheres 6663.9

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1711.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 1711.9
FF:10038-101F2 18-64 years, mixed 2427.3
FF:10155-103A2 76 years, female 1372.1
FF:10174-103C3 60 years, female 1336.1

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 896.5
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 896.5
Samples: 4

Max nTPM: 1215.6
Min nTPM: 626.9
Sample A Female 757.7
Sample B Female 626.9
Sample C Male 985.9
Sample D Male 1215.6

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.