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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:684.9 nTPM
GTEx:684.9 nTPM
FANTOM5:2486.5 Scaled Tags Per Million
Pig:92.3 nTPM
Mouse:617.2 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 684.9
GTEx sample id Sample description nTPM
Retina
Average nTPM: 684.9
Samples: 105

Max nTPM: 2367.2
Min nTPM: 97.2
Std nTPM: 288.2
Median nTPM:
99_1 64 years, male 2367.2
218_1 71 years, female 1264.8
319_1 81 years, male 1182.6
452_1 88 years, female 1178.7
384_1 83 years, male 1071.7
379_1 60 years, male 1020.2
351_1 91 years, male 1018.4
173_1 67 years, male 992.2
349_1 83 years, male 985.8
322_1 76 years, male 975.0
353_1 82 years, female 955.0
317_1 60 years, male 948.2
41_1 94 years, female 933.0
295_1 61 years, female 918.1
377_1 82 years, female 917.0
480_1 63 years, male 914.9
386_1 76 years, male 910.5
354_1 81 years, female 907.7
321_1 62 years, female 906.5
447_1 81 years, male 903.6
318_1 68 years, male 877.1
2_1 77 years, female 875.6
348_1 84 years, male 863.7
163_1 78 years, male 858.8
237_1 82 years, male 850.9
293_1 68 years, female 830.1
243_1 75 years, male 817.1
320_1 89 years, female 809.4
6_1 73 years, female 802.7
352_1 62 years, male 800.9
375_1 74 years, female 789.6
189_1 76 years, male 788.1
389_1 86 years, female 773.3
137_1 83 years, male 772.9
311_1 78 years, male 769.7
251_1 78 years, male 769.5
526_1 61 years, male 769.0
350_1 84 years, female 768.3
355_1 70 years, female 767.4
177_1 74 years, male 753.6
506_1 65 years, male 751.2
347_1 72 years, male 749.6
4_1 88 years, female 739.1
405_1 91 years, male 737.4
394_1 75 years, female 736.5
376_1 75 years, female 732.8
153_1 70 years, female 727.6
264_1 73 years, female 724.5
229_1 69 years, female 723.7
308_1 70 years, female 722.9
172_1 72 years, female 712.9
406_1 79 years, male 707.7
316_1 62 years, male 701.4
335_1 73 years, female 688.9
265_1 87 years, male 686.5
17_1 71 years, male 685.7
286_1 68 years, female 682.2
356_1 87 years, female 673.9
291_1 76 years, male 669.4
396_1 62 years, male 666.6
404_1 82 years, female 664.7
9_1 66 years, female 659.5
35_1 74 years, female 641.5
120_1 70 years, female 635.0
307_1 66 years, female 634.1
314_1 67 years, male 630.1
503_1 68 years, male 617.9
145_1 84 years, male 604.6
115_1 83 years, male 602.0
292_1 71 years, male 600.3
42_1 85 years, male 587.5
254_1 77 years, female 576.3
425_1 59 years, female 571.6
246_1 77 years, male 570.6
517_1 88 years, male 560.5
81_1 67 years, male 558.3
18_1 88 years, male 540.1
117_1 61 years, male 505.1
109_1 81 years, female 499.1
126_1 63 years, male 498.3
518_1 75 years, female 494.9
139_1 64 years, female 486.1
495_1 57 years, female 465.2
288_1 66 years, female 456.7
324_1 76 years, male 453.7
313_1 79 years, female 452.4
468_1 89 years, male 440.2
266_1 85 years, male 439.5
119_1 70 years, female 425.1
315_1 62 years, female 406.0
499_1 55 years, female 405.4
217_1 76 years, male 404.3
162_1 79 years, female 357.6
142_1 61 years, female 336.5
43_1 64 years, female 333.5
466_1 57 years, female 312.8
32_1 67 years, male 298.3
89_1 63 years, male 289.8
415_1 77 years, female 270.2
501_1 88 years, male 246.6
414_1 84 years, female 223.1
149_1 88 years, male 207.2
490_1 67 years, female 143.1
491_1 89 years, female 114.1
413_1 59 years, female 97.2
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 2486.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 2486.5
FF:10030-101E3 24-65 years, mixed 2486.5

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 92.3
Pig sample Sample description nTPM
Retina
nTPM: 92.3
Samples: 4

Max nTPM: 116.7
Min nTPM: 76.0
Sample A Female 84.5
Sample B Female 91.9
Sample C Male 116.7
Sample D Male 76.0

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 617.2
Mouse sample Sample description nTPM
Retina
nTPM: 617.2
Samples: 4

Max nTPM: 762.2
Min nTPM: 459.7
Sample A Male 557.5
Sample B Male 459.7
Sample C Female 689.2
Sample D Female 762.2

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