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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:4509.7 nTPM
GTEx:3842.9 nTPM
FANTOM5:692.0 Scaled Tags Per Million
Pig:2456.0 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 4509.7
Sample id Sample description nTPM
Putamen
nTPM: 4509.7
2482 Female, age 94, left hemisphere 4746.7
2647 Male, age 75, left hemisphere 4635.0
2466 Female, age 79, unknown 4531.1
1937 Female, age 91, right hemisphere 4467.5
2489 Female, age 72, unknown 4462.6
1838 Male, age 80, right hemisphere 4455.2
1829 Male, age 74, unknown 4269.6

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 3842.9
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 3842.9
Samples: 205

Max nTPM: 11291.2
Min nTPM: 1068.0
Std nTPM: 1888.1
Median nTPM: 3315.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 11291.2
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 10940.0
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 10565.9
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 10549.9
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 9184.2
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 7898.1
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 7777.9
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 7766.1
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 7720.6
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 7706.4
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 7672.7
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 7316.7
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 7305.8
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 7227.8
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 7199.8
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 7196.3
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 7044.7
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 6759.2
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 6689.1
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 6683.2
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 6644.2
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 6424.0
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 6320.9
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 6287.8
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 6231.3
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 6195.3
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 6157.1
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 6133.0
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 5844.2
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 5801.5
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 5590.9
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 5559.7
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 5468.8
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 5404.2
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 5388.5
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 5380.1
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 5360.2
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 5252.6
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 5089.4
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 5041.3
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 4969.8
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 4952.9
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 4922.1
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 4903.2
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 4894.6
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 4867.4
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 4836.4
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 4830.8
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 4816.3
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 4783.4
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 4743.7
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 4644.0
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 4632.0
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 4530.5
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 4504.6
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 4499.3
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 4493.4
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 4467.6
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 4436.6
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 4418.2
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 4409.2
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 4381.5
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 4229.6
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 4216.5
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 4215.3
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 4212.5
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 4203.9
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 4196.4
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 4174.0
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 4158.0
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 4150.0
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 4132.2
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 4128.6
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 4058.7
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 4044.7
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 4038.3
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 4002.2
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 3995.6
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 3935.9
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 3924.9
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 3789.4
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 3761.4
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 3755.2
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 3708.7
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 3653.3
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 3641.7
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 3611.1
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 3576.7
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 3559.9
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 3553.0
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 3543.1
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 3517.9
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 3511.1
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 3486.2
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 3445.4
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 3439.4
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 3429.0
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 3423.1
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 3351.0
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 3343.0
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 3331.0
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 3323.6
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 3315.3
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 3315.2
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 3304.7
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 3294.8
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 3287.4
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 3278.8
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 3273.0
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 3254.0
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 3250.2
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 3187.8
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 3177.5
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 3174.7
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 3161.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 3156.8
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 3129.0
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 3107.9
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 3098.7
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 3089.7
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 3072.3
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 3059.3
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 3059.0
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 3008.0
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 2983.3
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 2974.8
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 2972.9
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 2970.0
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 2920.6
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 2910.2
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 2850.5
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 2840.8
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 2833.3
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 2818.8
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 2738.8
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 2717.5
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 2716.9
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 2711.3
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 2699.1
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 2695.8
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 2655.8
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 2655.2
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 2619.0
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 2612.8
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 2583.2
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 2572.2
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 2555.2
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 2549.5
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 2534.7
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 2524.9
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 2485.9
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 2480.2
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 2476.7
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 2458.3
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 2457.4
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 2453.7
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 2449.6
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 2449.0
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 2432.7
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 2419.2
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 2409.0
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 2391.4
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 2376.7
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 2350.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 2333.2
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 2315.7
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 2282.2
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 2281.7
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 2277.9
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 2272.9
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 2271.2
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 2259.8
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 2246.4
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 2239.9
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 2175.7
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 2169.9
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 2108.8
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 2091.3
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 2075.6
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 2069.1
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 2030.6
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 2020.1
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 1994.8
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 1976.1
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 1966.6
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 1956.5
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 1920.5
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 1915.4
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 1892.2
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 1883.4
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 1880.8
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 1861.0
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 1853.7
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 1830.2
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 1828.9
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 1819.7
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 1794.0
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 1772.6
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 1718.0
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 1703.3
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 1669.3
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 1599.4
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 1150.5
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 1075.9
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 1068.0
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 692.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 692.0
FF:10176-103C5 60 years, female 692.0

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2456.0
Pig sample Sample description nTPM
Putamen
nTPM: 2456.0
Samples: 4

Max nTPM: 3681.3
Min nTPM: 1819.8
Sample A Female 2148.5
Sample B Female 1819.8
Sample C Male 3681.3
Sample D Male 2174.5

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