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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:408.7 nTPM
HPA:408.7 nTPM
GTEx:436.7 nTPM
FANTOM5:218.9 Scaled Tags Per Million
Pig:195.1 nTPM
Mouse:0.2 nTPM
Allen mouse:15.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 408.7
Sample id Sample description nTPM
Amygdala
nTPM: 392.0
2814 Male, age 76, right hemisphere 473.9
2514 Male, age 75, right hemisphere 430.9
2695 Female, age 67, right hemisphere 371.7
1987 Female, age 91, left hemisphere 356.3
2517 Female, age 94, left hemisphere 327.4
Basal amygdala
nTPM: 335.7
2827 Female, age 67, right hemisphere 393.5
2609 Male, age 75, right hemisphere 369.7
2110 Male, age 80, left hemisphere 366.1
2685 Female, age 94, left hemisphere 319.9
1955 Male, age 76, both hemispheres 318.0
2243 Female, age 91, right hemisphere 246.9
Central amygdala
nTPM: 394.7
2515 Male, age 75, right hemisphere 443.9
2826 Female, age 94, left hemisphere 403.1
1905 Male, age 76, both hemispheres 402.8
2239 Male, age 80, left hemisphere 401.6
2701 Female, age 91, right hemisphere 322.0
Corticomedial amygdala
nTPM: 315.1
2428 Male, age 75, right hemisphere 359.9
2535 Female, age 67, right hemisphere 322.2
2429 Female, age 94, left hemisphere 319.4
2829 Male, age 80, left hemisphere 309.1
2242 Female, age 91, right hemisphere 308.9
2240 Male, age 76, both hemispheres 271.1
Lateral amygdala
nTPM: 408.7
2830 Female, age 67, right hemisphere 490.2
2516 Male, age 75, right hemisphere 489.6
1883 Male, age 76, both hemispheres 411.8
2256 Male, age 80, left hemisphere 410.1
2534 Female, age 94, left hemisphere 349.0
2255 Female, age 91, right hemisphere 301.4
Stria terminalis, bed nucleus
nTPM: 253.9
2201 Male, age 74, unknown 277.9
1974 Female, age 91, both hemispheres 255.4
2486 Female, age 94, both hemispheres 228.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 436.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 436.7
Samples: 152

Max nTPM: 1252.0
Min nTPM: 7.1
Std nTPM: 169.1
Median nTPM: 417.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1252.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 892.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 854.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 846.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 842.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 771.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 752.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 748.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 725.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 680.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 678.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 674.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 668.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 664.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 649.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 648.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 631.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 622.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 616.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 616.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 615.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 603.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 599.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 594.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 594.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 594.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 591.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 588.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 578.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 575.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 569.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 556.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 549.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 547.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 542.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 534.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 534.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 533.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 531.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 523.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 513.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 512.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 506.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 506.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 502.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 495.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 490.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 489.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 481.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 480.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 477.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 474.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 473.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 470.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 467.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 467.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 466.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 465.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 455.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 454.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 452.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 449.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 449.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 448.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 448.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 447.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 445.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 441.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 440.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 439.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 438.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 435.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 433.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 432.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 430.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 422.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 411.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 409.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 409.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 408.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 408.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 404.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 401.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 399.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 393.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 393.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 390.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 387.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 385.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 374.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 371.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 369.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 364.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 362.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 362.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 359.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 359.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 355.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 350.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 349.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 344.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 338.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 336.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 336.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 336.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 334.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 333.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 332.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 332.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 330.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 330.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 329.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 325.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 323.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 322.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 322.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 316.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 313.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 312.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 311.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 309.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 308.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 305.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 299.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 299.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 295.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 290.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 284.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 282.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 280.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 278.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 276.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 273.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 273.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 272.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 264.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 256.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 253.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 248.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 244.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 238.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 224.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 219.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 211.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 206.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 200.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 198.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 165.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 164.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 153.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 148.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 7.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 218.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 218.9
FF:10151-102I7 76 years, female 218.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 195.1
Pig sample Sample description nTPM
Amygdala
nTPM: 195.1
Samples: 4

Max nTPM: 207.2
Min nTPM: 164.1
Sample A Female 164.1
Sample B Female 203.3
Sample C Male 207.2
Sample D Male 205.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 0.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 650.5
Samples: 4

Max nTPM: 741.5
Min nTPM: 588.7
Sample A Male 628.0
Sample B Male 588.7
Sample C Female 741.5
Sample D Female 643.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 15.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 15.7
68633119 Antisense, RP_050125_02_D10, Mouse strain C57BL/6J (56 days, male) 16.9
74819250 Antisense, RP_060315_02_D02, Mouse strain C57BL/6J (56 days, male) 14.5
75863344 Antisense, RP_060601_03_C07, Mouse strain C57BL/6J (56 days, male) 0.1
Cortical subplate
Expression energy: 15.7
68633119 Antisense, RP_050125_02_D10, Mouse strain C57BL/6J (56 days, male) 16.9
74819250 Antisense, RP_060315_02_D02, Mouse strain C57BL/6J (56 days, male) 14.5
75863344 Antisense, RP_060601_03_C07, Mouse strain C57BL/6J (56 days, male) 0.1

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