MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:508.9 nTPM
HPA:508.9 nTPM
GTEx:501.4 nTPM
FANTOM5:520.9 Scaled Tags Per Million
Pig:295.7 nTPM
Mouse:0.0 nTPM
Allen mouse:15.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 508.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 506.8
1870 Female, age 42, unknown 616.8
2411 Female, age 72, unknown 610.2
1830 Male, age 51, unknown 605.2
1833 Male, age 53, unknown 583.7
2828 Female, age 72, unknown 534.5
2586 Male, age 75, left hemisphere 479.7
2019 Male, age 18, unknown 453.3
1827 Male, age 72, unknown 423.1
2666 Male, age 74, left hemisphere 405.3
2219 Male, age 76, both hemispheres 355.8
Dorsal raphe nucleus
nTPM: 453.5
2750 Male, age 76, both hemispheres 665.6
2016 Female, age 72, unknown 438.8
2047 Male, age 72, unknown 397.6
1828 Male, age 53, unknown 394.3
2298 Female, age 72, unknown 371.1
Inferior colliculus
nTPM: 365.0
1848 Female, age 42, unknown 390.6
2849 Male, age 72, unknown 383.7
1890 Male, age 53, unknown 363.6
2097 Female, age 72, unknown 322.1
Median raphe nucleus
nTPM: 464.4
2220 Male, age 76, midline 464.4
Pedunculopontine tegmental nucleus
nTPM: 477.7
2334 Male, age 80, both hemispheres 573.1
1921 Female, age 85, both hemispheres 450.1
2338 Male, age 61, both hemispheres 409.8
Periaquaductal grey, anterior
nTPM: 442.7
2502 Female, age 75, unknown 549.5
1947 Male, age 18, unknown 398.1
1795 Male, age 51, unknown 380.4
Periaquaductal grey, dorsal
nTPM: 369.5
2464 Female, age 72, unknown 440.9
1831 Male, age 72, unknown 378.7
2850 Male, age 76, both hemispheres 348.2
1840 Male, age 53, unknown 310.4
Periaquaductal grey, lateral
nTPM: 400.9
2053 Male, age 18, unknown 515.6
2272 Male, age 74, both hemispheres 355.5
2140 Male, age 76, both hemispheres 331.7
Pretectal area
nTPM: 403.8
2407 Male, age 75, both hemispheres 516.0
2667 Female, age 75, unknown 479.5
2825 Male, age 18, unknown 479.4
2316 Male, age 76, right hemisphere 474.6
1815 Male, age 53, unknown 438.0
2224 Female, age 72, unknown 401.8
2273 Male, age 74, both hemispheres 387.6
1817 Female, age 42, unknown 354.4
2007 Male, age 72, unknown 326.6
1816 Male, age 51, unknown 293.1
1944 Female, age 72, unknown 290.8
Red nucleus
nTPM: 508.9
1865 Male, age 51, unknown 579.7
1904 Male, age 53, unknown 576.3
2227 Male, age 72, unknown 572.5
2769 Male, age 72, unknown 569.2
1821 Female, age 72, unknown 556.8
2823 Male, age 76, right hemisphere 533.3
2584 Male, age 75, left hemisphere 515.9
2785 Male, age 18, unknown 501.9
1954 Female, age 42, unknown 465.4
2503 Female, age 72, unknown 456.6
2588 Male, age 74, left hemisphere 428.4
2725 Female, age 75, unknown 351.0
Substantia nigra
nTPM: 372.1
2583 Male, age 75, right hemisphere 447.8
1851 Male, age 51, unknown 407.2
1889 Female, age 72, unknown 383.7
2590 Female, age 75, unknown 380.1
2665 Male, age 74, both hemispheres 377.5
1941 Male, age 53, unknown 366.6
2241 Male, age 72, unknown 349.3
1916 Female, age 42, unknown 343.0
2699 Male, age 18, unknown 337.8
2409 Female, age 72, unknown 328.5
Superior colliculus
nTPM: 452.7
1913 Female, age 42, unknown 572.6
1995 Male, age 72, unknown 537.7
2664 Male, age 75, both hemispheres 526.6
1895 Male, age 76, right hemisphere 474.9
1839 Male, age 51, unknown 462.9
2587 Male, age 74, left hemisphere 448.8
2668 Female, age 75, unknown 406.8
1796 Male, age 53, unknown 396.2
2261 Male, age 18, unknown 366.3
2087 Female, age 72, unknown 334.7
Ventral tegmental area
nTPM: 473.6
2223 Female, age 72, unknown 680.2
2021 Male, age 53, unknown 474.8
1942 Male, age 51, unknown 464.0
2410 Female, age 72, unknown 436.7
1915 Female, age 42, unknown 400.4
2218 Male, age 76, both hemispheres 385.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 501.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 501.4
Samples: 139

Max nTPM: 1118.7
Min nTPM: 160.6
Std nTPM: 197.9
Median nTPM: 475.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1118.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 991.0
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 962.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 934.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 914.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 871.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 870.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 849.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 838.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 823.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 821.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 520.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 520.9
FF:10158-103A5 76 years, female 520.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 295.7
Pig sample Sample description nTPM
Midbrain
nTPM: 295.7
Samples: 4

Max nTPM: 551.2
Min nTPM: 167.8
Sample A Female 551.2
Sample B Female 260.1
Sample C Male 203.7
Sample D Male 167.8
Periaqueductal gray
nTPM: 205.3
Samples: 3

Max nTPM: 238.0
Min nTPM: 175.0
Sample B Female 238.0
Sample C Male 203.0
Sample D Male 175.0
Substantia nigra
nTPM: 245.7
Samples: 4

Max nTPM: 316.8
Min nTPM: 166.6
Sample A Female 258.7
Sample B Female 166.6
Sample C Male 240.5
Sample D Male 316.8
Superior colliculi
nTPM: 201.1
Samples: 4

Max nTPM: 250.4
Min nTPM: 113.2
Sample A Female 204.7
Sample B Female 113.2
Sample C Male 236.1
Sample D Male 250.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 992.0
Samples: 4

Max nTPM: 1010.9
Min nTPM: 971.7
Sample A Male 971.7
Sample B Male 979.4
Sample C Female 1006.1
Sample D Female 1010.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.7
74819250 Antisense, RP_060315_02_D02, Mouse strain C57BL/6J (56 days, male) 17.6
68633119 Antisense, RP_050125_02_D10, Mouse strain C57BL/6J (56 days, male) 13.8
75863344 Antisense, RP_060601_03_C07, Mouse strain C57BL/6J (56 days, male) 0.1
Midbrain
Expression energy: 15.7
74819250 Antisense, RP_060315_02_D02, Mouse strain C57BL/6J (56 days, male) 17.6
68633119 Antisense, RP_050125_02_D10, Mouse strain C57BL/6J (56 days, male) 13.8
75863344 Antisense, RP_060601_03_C07, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.