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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:775.0 nTPM
HPA:775.0 nTPM
FANTOM5:481.7 Scaled Tags Per Million
Pig:335.5 nTPM
Allen mouse:16.3 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max nTPM 775.0
Sample id Sample description nTPM
Area postrema
nTPM: 526.8
2799 Male, age 61, both hemispheres 604.2
2306 Male, age 80, both hemispheres 553.1
2054 Male, age 76, both hemispheres 423.2
Cuneate nuclei
nTPM: 551.5
2381 Male, age 80, both hemispheres 644.6
2376 Male, age 61, both hemispheres 545.3
2131 Male, age 76, both hemispheres 464.7
Dorsal medullary reticular nucleus
nTPM: 544.6
2373 Male, age 61, both hemispheres 571.7
2040 Female, age 85, both hemispheres 548.8
2088 Male, age 76, both hemispheres 513.3
Dorsal motor vagal complex
nTPM: 474.0
2797 Male, age 61, both hemispheres 669.2
2185 Male, age 76, both hemispheres 580.1
2807 Female, age 85, both hemispheres 496.2
2643 Male, age 74, both hemispheres 463.8
2133 Female, age 91, both hemispheres 438.6
2000 Male, age 74, unknown 391.1
2813 Female, age 72, unknown 381.7
2844 Male, age 55, unknown 370.9
Gigantocellular reticular nuclei, medullary
nTPM: 557.0
2387 Female, age 91, both hemispheres 741.6
2314 Male, age 61, both hemispheres 710.1
1876 Female, age 85, both hemispheres 609.9
2310 Male, age 80, both hemispheres 473.1
2022 Male, age 76, right hemisphere 451.4
2462 Male, age 74, both hemispheres 356.1
Gigantocellular reticular nuclei, pars
nTPM: 482.2
2706 Male, age 80, both hemispheres 502.0
2330 Male, age 80, both hemispheres 498.8
2336 Male, age 61, both hemispheres 482.8
2084 Female, age 85, both hemispheres 476.1
2168 Male, age 76, both hemispheres 451.2
Inferior olive
nTPM: 592.0
2178 Male, age 61, both hemispheres 660.5
2085 Female, age 85, both hemispheres 601.4
2628 Female, age 91, both hemispheres 582.5
2379 Male, age 80, both hemispheres 579.9
2563 Male, age 74, both hemispheres 535.7
Lateral medullary reticular nucleus
nTPM: 580.1
2852 Male, age 80, both hemispheres 671.3
2190 Female, age 85, both hemispheres 615.3
2374 Male, age 61, both hemispheres 595.8
2804 Female, age 91, both hemispheres 569.1
2305 Male, age 74, both hemispheres 529.3
2044 Male, age 76, both hemispheres 500.0
Medial vestibular nucleus
nTPM: 498.5
2803 Female, age 91, both hemispheres 596.4
2801 Male, age 74, both hemispheres 577.5
2093 Male, age 80, both hemispheres 503.0
2624 Male, age 61, both hemispheres 496.8
2743 Female, age 85, both hemispheres 476.3
2134 Male, age 76, both hemispheres 341.2
Motor hypoglossal nucleus
nTPM: 523.8
2132 Female, age 85, both hemispheres 633.2
2125 Female, age 91, both hemispheres 620.6
2182 Male, age 80, both hemispheres 576.3
2461 Male, age 61, both hemispheres 452.9
2277 Male, age 76, both hemispheres 336.2
Nucleus ambiguus
nTPM: 573.6
2071 Male, age 76, both hemispheres 717.2
2096 Female, age 85, both hemispheres 430.1
Nucleus cuneatus
nTPM: 584.6
2808 Female, age 85, both hemispheres 725.9
2380 Male, age 80, both hemispheres 695.7
2100 Male, age 76, both hemispheres 544.7
2805 Female, age 91, both hemispheres 529.8
2562 Male, age 61, both hemispheres 513.0
2564 Male, age 74, both hemispheres 498.7
Nucleus gracilis
nTPM: 608.2
2382 Male, age 80, both hemispheres 687.3
2299 Female, age 85, both hemispheres 619.4
2627 Male, age 74, both hemispheres 517.7
Nucleus raphe magnus
nTPM: 438.0
2459 Female, age 91, both hemispheres 564.6
2328 Male, age 80, both hemispheres 494.5
2051 Male, age 76, both hemispheres 478.9
2455 Male, age 74, both hemispheres 442.0
2160 Male, age 61, both hemispheres 343.4
2172 Female, age 85, both hemispheres 304.5
Nucleus raphe obscurus
nTPM: 775.0
2845 Female, age 85, midline 927.7
2142 Male, age 76, midline 747.5
2800 Male, age 61, midline 649.8
Nucleus raphe pallidus
nTPM: 622.6
2145 Male, age 76, midline 661.0
1924 Male, age 61, midline 620.8
2183 Male, age 80, midline 586.2
Nucleus tractus solitarii
nTPM: 348.3
2144 Female, age 91, right hemisphere 365.7
2191 Female, age 85, both hemispheres 356.1
2656 Male, age 76, both hemispheres 354.1
2307 Male, age 80, both hemispheres 317.1
Parvicellular reticular nuclei
nTPM: 484.6
2119 Male, age 80, both hemispheres 539.3
2095 Male, age 76, both hemispheres 530.6
2558 Male, age 74, both hemispheres 384.0
Parvicellular reticular nuclei, medullary
nTPM: 468.3
2189 Female, age 91, both hemispheres 519.6
2091 Female, age 85, both hemispheres 464.7
2181 Male, age 80, left hemisphere 420.6
Peritrigeminal nucleus
nTPM: 554.4
2067 Female, age 85, both hemispheres 584.0
2136 Male, age 76, both hemispheres 550.4
2179 Male, age 61, both hemispheres 528.9
Prepositus hypoglossal nucleus
nTPM: 559.5
2855 Female, age 85, right hemisphere 710.3
2086 Male, age 80, both hemispheres 408.7
Spinal trigeminal nucleus, caudal
nTPM: 514.5
2308 Male, age 80, both hemispheres 561.8
2312 Male, age 61, both hemispheres 533.8
2390 Female, age 91, both hemispheres 517.8
2447 Male, age 76, both hemispheres 517.3
2642 Male, age 74, both hemispheres 441.9
Spinal trigeminal nucleus, interpolar
nTPM: 467.7
2389 Female, age 91, both hemispheres 541.4
2386 Female, age 85, both hemispheres 526.3
2033 Male, age 80, both hemispheres 469.1
2066 Male, age 76, right hemisphere 406.8
2625 Male, age 61, both hemispheres 395.0
Spinal vestibular nucleus
nTPM: 530.2
2806 Female, age 85, both hemispheres 625.1
2748 Male, age 76, both hemispheres 596.8
2384 Male, age 74, both hemispheres 534.7
2186 Female, age 91, both hemispheres 531.1
2780 Male, age 80, both hemispheres 470.9
2796 Male, age 61, both hemispheres 422.6
Ventral medullary reticular nucleus
nTPM: 630.3
2372 Male, age 61, both hemispheres 696.1
2060 Male, age 76, both hemispheres 564.5
Ventrolateral medulla, A1-C1 cell groups
nTPM: 542.0
2118 Male, age 80, both hemispheres 598.1
2302 Female, age 91, both hemispheres 539.6
2180 Male, age 61, both hemispheres 539.2
2741 Female, age 85, both hemispheres 519.9
1986 Male, age 76, both hemispheres 513.1

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 481.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 481.7
FF:10038-101F2 18-64 years, mixed 570.6
FF:10174-103C3 60 years, female 510.0
FF:10155-103A2 76 years, female 364.5

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 335.5
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 335.5
Samples: 4

Max nTPM: 382.5
Min nTPM: 274.0
Sample A Female 326.9
Sample B Female 274.0
Sample C Male 358.6
Sample D Male 382.5

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 16.3
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 16.3
74819250 Antisense, RP_060315_02_D02, Mouse strain C57BL/6J (56 days, male) 18.3
68633119 Antisense, RP_050125_02_D10, Mouse strain C57BL/6J (56 days, male) 14.3
75863344 Antisense, RP_060601_03_C07, Mouse strain C57BL/6J (56 days, male) 0.1
Medulla oblongata
Expression energy: 16.3
74819250 Antisense, RP_060315_02_D02, Mouse strain C57BL/6J (56 days, male) 18.3
68633119 Antisense, RP_050125_02_D10, Mouse strain C57BL/6J (56 days, male) 14.3
75863344 Antisense, RP_060601_03_C07, Mouse strain C57BL/6J (56 days, male) 0.1

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