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BRAIN HIPPOCAMPUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: High
Neuronal cells: High
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
18.339
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:48.1 nTPM
GTEx:94.5 nTPM
FANTOM5:120.4 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA002907Antibody HPA005835
Glial cells MediumHigh
Neuronal cells LowHigh





HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

Read more
, antibody HPA005835
Hippocampal formation mean intensity 18.339
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
FRONT BACK
Polymorph layer of the dentate gyrus 9.369
Molecular layer of the dentate gyrus 3.102
Granular dentate gyrus 16.035
CA1 - oriens layer 7.834
CA1 - pyramidal layer 12.455
CA1 - radiatum layer 3.053
CA2 - oriens layer 3.805
CA2 - pyramidal layer 11.680
CA2 - radiatum layer 1.356
CA3 - oriens layer 3.108
CA3 - pyramidal layer 10.510
CA3 - radiatum layer 0.761
Stratum lucidum 9.701
Lacunosum moleculare 18.339
Subiculum 5.919

HIPPOCAMPUS - HPA Brain RNA-seq
Avg nTPM 48.1
Sample id Sample description nTPM
Hippocampus
nTPM: 48.1
2529 Female, age 94, left hemisphere 50.6
1898 Male, age 80, left hemisphere 48.5
1911 Female, age 85, right hemisphere 47.9
2148 Female, age 91, left hemisphere 47.7
1855 Male, age 76, left hemisphere 47.6
2621 Female, age 67, right hemisphere 46.6

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 94.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 94.5
Samples: 197

Max nTPM: 160.5
Min nTPM: 57.3
Std nTPM: 17.9
Median nTPM: 93.5
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 160.5
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 144.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 143.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 139.7
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 139.4
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 131.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 131.7
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 129.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 127.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 126.0
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 125.6
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 124.3
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 123.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 122.8
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 121.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 120.2
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 120.1
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 119.6
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 118.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 118.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 118.3
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 118.3
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 118.1
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 117.2
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 116.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 116.2
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 115.1
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 113.1
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 112.8
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 112.1
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 111.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 110.8
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 110.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 110.3
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 109.9
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 109.7
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 109.1
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 107.3
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 107.3
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 107.2
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 107.0
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 106.7
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 106.5
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 106.4
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 106.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 105.8
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 105.7
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 105.6
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 105.3
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 105.2
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 104.9
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 104.8
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 103.1
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 102.7
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 102.5
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 102.4
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 102.1
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 101.8
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 101.7
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 101.3
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 101.3
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 101.2
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 101.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 100.6
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 100.3
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 100.3
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 99.8
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 99.7
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 99.6
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 99.6
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 98.9
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 98.9
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 98.8
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 98.6
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 98.5
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 97.9
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 97.7
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 97.5
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 97.4
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 97.3
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 97.2
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 96.6
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 96.3
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 96.2
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 96.2
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 95.9
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 95.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 95.8
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 95.7
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 95.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 95.4
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 95.2
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 94.9
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 94.2
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 93.9
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 93.7
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 93.7
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 93.6
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 93.5
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 93.4
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 93.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 92.8
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 92.7
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 92.7
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 92.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 92.5
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 92.3
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 92.0
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 91.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 90.7
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 90.6
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 90.6
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 90.0
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 90.0
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 89.8
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 89.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 88.7
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 88.5
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 88.4
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 88.4
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 88.3
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 87.9
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 87.6
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 87.5
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 87.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 87.1
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 86.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 86.5
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 86.4
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 86.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 85.9
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 85.9
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 85.8
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 85.6
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 84.9
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 84.9
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 84.7
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 84.6
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 84.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 84.2
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 84.0
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 84.0
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 84.0
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 83.1
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 83.1
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 83.0
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 82.9
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 82.9
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 82.7
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 82.7
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 82.5
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 81.8
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 81.6
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 81.5
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 80.8
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 80.6
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 80.4
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 79.8
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 78.6
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 78.5
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 78.0
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 77.7
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 77.6
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 76.8
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 76.5
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 76.2
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 76.1
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 76.0
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 76.0
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 75.7
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 75.6
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 75.5
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 75.3
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 74.4
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 74.0
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 73.8
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 73.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 72.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 72.7
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 72.5
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 72.0
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 71.5
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 71.0
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 69.7
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 69.1
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 68.7
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 65.7
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 64.9
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 64.0
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 63.9
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 63.7
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 63.4
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 63.3
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 63.1
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 61.7
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 57.4
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 57.3
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 120.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 120.4
FF:10153-102I9 76 years, female 133.2
FF:10169-103B7 60 years, female 107.7

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The Human Protein Atlas

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.