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BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
7.743
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:955.7 nTPM
HPA:955.7 nTPM
GTEx:759.3 nTPM
FANTOM5:469.0 Scaled Tags Per Million
Pig:122.4 nTPM
Mouse:1113.7 nTPM
Allen mouse:7.6 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

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Antibody HPA003282Antibody CAB020828
Glial cells MediumMedium
Neuronal cells MediumMedium




HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

Read more
, antibody HPA067442
Hippocampal formation mean intensity 7.743
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
FRONT BACK
Polymorph layer of the dentate gyrus 6.181
Molecular layer of the dentate gyrus 4.439
Granular dentate gyrus 7.743
CA1 - oriens layer 0.470
CA1 - pyramidal layer 1.000
CA1 - radiatum layer 0.746
CA2 - oriens layer 0.364
CA2 - pyramidal layer 0.314
CA2 - radiatum layer 1.374
CA3 - oriens layer 1.441
CA3 - pyramidal layer 3.091
CA3 - radiatum layer 1.027
Stratum lucidum 0.617
Lacunosum moleculare 2.856
Subiculum 3.286

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 955.7
Sample id Sample description nTPM
Hippocampus
nTPM: 936.1
1898 Male, age 80, left hemisphere 1009.4
2148 Female, age 91, left hemisphere 949.3
2621 Female, age 67, right hemisphere 946.4
2529 Female, age 94, left hemisphere 936.1
1855 Male, age 76, left hemisphere 890.4
1911 Female, age 85, right hemisphere 885.0
Dentate gyrus
nTPM: 892.6
2528 Male, age 74, both hemispheres 995.7
2530 Female, age 94, left hemisphere 917.0
1927 Female, age 91, both hemispheres 904.5
2246 Female, age 85, both hemispheres 893.1
2010 Male, age 76, both hemispheres 890.9
2531 Female, age 67, both hemispheres 754.2
Entorhinal gyrus
nTPM: 861.5
2117 Female, age 91, right hemisphere 956.3
1938 Female, age 85, left hemisphere 909.5
2686 Male, age 75, right hemisphere 844.9
2764 Male, age 80, right hemisphere 840.8
2613 Female, age 94, left hemisphere 810.7
1787 Male, age 76, left hemisphere 806.9
Hippocampus, CA1
nTPM: 955.7
2527 Male, age 74, both hemispheres 1089.2
2749 Male, age 80, left hemisphere 1053.6
1873 Female, age 85, both hemispheres 1015.4
2082 Female, age 91, right hemisphere 829.7
2045 Male, age 76, both hemispheres 790.4
Hippocampus, CA2
nTPM: 927.8
1963 Male, age 80, left hemisphere 1056.0
2249 Male, age 74, both hemispheres 1019.3
1892 Male, age 76, both hemispheres 959.7
2437 Female, age 94, left hemisphere 883.6
2113 Female, age 91, right hemisphere 866.2
1940 Female, age 85, left hemisphere 781.7
Hippocampus, CA3
nTPM: 863.5
2436 Male, age 74, both hemispheres 955.7
2861 Female, age 67, both hemispheres 873.0
1867 Male, age 76, both hemispheres 860.4
1891 Female, age 85, both hemispheres 858.8
2137 Male, age 80, left hemisphere 820.0
2620 Female, age 94, left hemisphere 812.8
Parahippocampal cortex
nTPM: 889.7
2622 Female, age 67, right hemisphere 1009.9
2692 Male, age 74, both hemispheres 981.7
2250 Female, age 67, right hemisphere 954.1
1933 Female, age 85, both hemispheres 917.6
2245 Female, age 91, both hemispheres 890.0
2693 Female, age 94, both hemispheres 876.6
1990 Female, age 91, right hemisphere 849.7
1850 Male, age 80, both hemispheres 828.4
2532 Female, age 72, left hemisphere 798.4
2018 Male, age 76, both hemispheres 790.4
Perirhinal gyrus
nTPM: 848.8
1847 Female, age 91, left hemisphere 922.1
1794 Male, age 80, right hemisphere 872.8
1841 Female, age 85, right hemisphere 863.8
2521 Female, age 94, right hemisphere 822.0
2848 Male, age 76, right hemisphere 763.4
Subiculum
nTPM: 869.4
2619 Male, age 74, both hemispheres 1002.1
2729 Female, age 91, right hemisphere 946.5
2438 Female, age 94, left hemisphere 857.2
1977 Female, age 85, both hemispheres 842.0
1901 Male, age 80, both hemispheres 797.6
2042 Male, age 76, both hemispheres 771.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 759.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 759.3
Samples: 197

Max nTPM: 1834.5
Min nTPM: 108.8
Std nTPM: 308.1
Median nTPM: 743.0
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 1834.5
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 1637.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 1597.3
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 1539.4
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 1476.0
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 1467.7
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 1417.7
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 1367.6
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 1358.1
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 1300.9
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 1296.4
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 1276.0
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 1274.8
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 1272.7
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 1269.1
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 1230.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 1223.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 1204.4
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 1176.0
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 1175.3
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 1111.6
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 1110.3
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 1110.1
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 1106.0
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 1101.8
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 1098.5
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 1074.0
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 1070.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 1066.3
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 1045.5
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 1036.6
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 1031.6
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 1027.9
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 1018.7
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 1004.1
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 994.2
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 993.6
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 986.7
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 982.7
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 973.5
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 972.3
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 965.6
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 964.3
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 964.1
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 963.5
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 963.1
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 941.2
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 928.9
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 923.4
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 921.0
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 917.5
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 908.7
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 906.3
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 904.1
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 903.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 902.0
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 900.4
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 899.8
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 896.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 894.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 893.9
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 889.5
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 885.5
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 885.5
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 885.3
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 881.0
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 879.1
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 875.1
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 868.5
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 865.8
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 861.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 854.6
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 852.1
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 839.3
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 838.9
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 833.6
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 833.3
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 830.9
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 827.7
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 826.2
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 821.5
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 812.8
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 807.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 801.8
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 800.6
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 792.0
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 787.1
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 780.4
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 780.2
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 776.4
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 775.0
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 772.7
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 772.0
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 764.0
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 762.6
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 761.8
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 759.6
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 746.0
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 743.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 742.7
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 735.4
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 734.6
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 729.9
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 729.0
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 728.9
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 726.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 720.3
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 716.3
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 712.7
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 711.8
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 711.5
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 710.6
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 705.9
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 698.6
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 695.0
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 693.1
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 690.0
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 685.8
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 678.1
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 672.8
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 661.3
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 658.6
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 656.0
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 654.4
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 653.4
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 651.3
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 650.4
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 648.6
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 634.5
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 633.0
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 632.5
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 622.7
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 616.4
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 603.5
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 595.7
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 590.1
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 589.8
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 588.7
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 579.5
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 572.2
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 559.5
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 557.1
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 543.4
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 543.1
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 542.8
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 539.5
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 534.9
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 534.5
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 529.0
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 527.9
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 517.6
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 516.6
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 516.6
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 510.1
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 493.4
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 492.8
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 492.0
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 484.0
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 472.3
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 469.1
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 466.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 456.1
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 451.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 448.8
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 445.4
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 436.7
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 436.4
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 435.6
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 431.6
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 423.1
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 416.4
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 410.4
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 409.8
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 402.5
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 385.0
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 375.3
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 371.6
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 370.1
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 351.8
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 349.4
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 347.9
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 344.8
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 341.4
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 340.2
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 325.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 325.2
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 317.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 313.2
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 287.7
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 283.6
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 257.0
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 237.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 215.6
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 214.9
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 182.1
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 166.0
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 108.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 469.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 469.0
FF:10169-103B7 60 years, female 512.7
FF:10153-102I9 76 years, female 425.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 122.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 109.0
Samples: 4

Max nTPM: 161.9
Min nTPM: 68.4
Sample A Female 161.9
Sample B Female 105.8
Sample C Male 99.8
Sample D Male 68.4
Entorhinal cortex
nTPM: 122.4
Samples: 4

Max nTPM: 165.0
Min nTPM: 84.0
Sample A Female 124.9
Sample B Female 165.0
Sample C Male 115.6
Sample D Male 84.0
Subiculum
nTPM: 107.6
Samples: 4

Max nTPM: 158.7
Min nTPM: 66.1
Sample A Female 158.7
Sample B Female 118.1
Sample C Male 87.3
Sample D Male 66.1
Ventral hippocampus
nTPM: 110.4
Samples: 4

Max nTPM: 142.6
Min nTPM: 88.1
Sample A Female 120.7
Sample B Female 88.1
Sample C Male 142.6
Sample D Male 90.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1113.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 1113.7
Samples: 4

Max nTPM: 1285.2
Min nTPM: 949.8
Sample A Male 1127.7
Sample B Male 949.8
Sample C Female 1285.2
Sample D Female 1092.1
Hippocampal formation
nTPM: 1013.6
Samples: 4

Max nTPM: 1173.6
Min nTPM: 882.3
Sample A Male 1173.6
Sample B Male 882.3
Sample C Female 898.1
Sample D Female 1100.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 7.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.6
79556636 Antisense, RP_071204_01_A02, Mouse strain C57BL/6J (56 days, male) 11.1
275696 Antisense, RP_040617_01_C08, Mouse strain C57BL/6J (56 days, male) 9.7
73512352 Antisense, RP_050719_02_A05, Mouse strain C57BL/6J (56 days, male) 2.0
71022960 Antisense, RP_050719_02_A05, Mouse strain C57BL/6J (56 days, male) 0.8

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