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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Mouse brain, Intensity
Ponsi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

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21.937
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:1384.6 nTPM
HPA:1384.6 nTPM
FANTOM5:1031.8 Scaled Tags Per Million
Pig:233.4 nTPM
Allen mouse:9.6 Expression energy

PONS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

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, antibody HPA067442
Pons mean intensity 21.937
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

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FRONT BACK
Barrington's nucleus -
Koelliker-fuse nucleus -
Motor tregiminal nucleus 1.152
Parabrachial nucleus 3.334
Principle sensory trigeminal nucleus 8.950
Locus coeruleus 0.722
Pontine nucleus 21.937
Vestibular nucleus 11.235
Pontine reticular nucleus, oral 0.656
Lateral lemniscus 17.804
Superior paraolivary nucleus 13.953

PONS - HPA Brain RNA-seq
Max nTPM 1384.6
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 931.7
1984 Male, age 76, both hemispheres 1031.2
2301 Female, age 85, both hemispheres 937.9
2188 Female, age 91, both hemispheres 920.8
2090 Male, age 80, both hemispheres 837.2
Dorsal cochlear nucleus
nTPM: 892.6
2058 Male, age 76, both hemispheres 977.2
2802 Male, age 74, right hemisphere 895.0
2370 Male, age 61, both hemispheres 880.1
2187 Female, age 91, both hemispheres 873.0
2378 Male, age 80, both hemispheres 837.8
Dorsal tegmental nucleus
nTPM: 887.4
2083 Male, age 80, both hemispheres 974.3
1936 Male, age 76, left hemisphere 950.7
2326 Male, age 74, both hemispheres 876.1
2358 Male, age 61, both hemispheres 748.5
Dorsolateral tegmental area
nTPM: 878.0
2751 Female, age 85, both hemispheres 973.8
2654 Male, age 80, both hemispheres 970.1
2141 Male, age 76, both hemispheres 930.2
2360 Male, age 74, both hemispheres 859.4
2337 Male, age 61, both hemispheres 656.8
Kolliker-Fuse nucleus
nTPM: 1028.0
2163 Male, age 80, both hemispheres 1175.0
2315 Male, age 76, right hemisphere 968.7
2793 Female, age 91, left hemisphere 940.2
Lateral lemniscal nuclei
nTPM: 1154.2
2169 Male, age 76, both hemispheres 1407.9
2036 Male, age 80, both hemispheres 1333.6
2746 Female, age 85, left hemisphere 1117.3
2453 Male, age 74, right hemisphere 972.8
2320 Female, age 91, left hemisphere 939.6
Lateral parabrachial nucleus
nTPM: 1026.7
2139 Female, age 85, right hemisphere 1277.7
2013 Male, age 80, both hemispheres 1017.0
2790 Male, age 61, both hemispheres 922.5
2792 Male, age 76, both hemispheres 889.8
Lateral vestibular nucleus
nTPM: 1045.4
2184 Male, age 76, both hemispheres 1186.0
2311 Male, age 80, both hemispheres 904.8
Locus coeruleus
nTPM: 981.1
2123 Female, age 91, both hemispheres 1048.8
2317 Female, age 72, unknown 1032.8
2014 Male, age 55, unknown 999.2
1980 Male, age 76, both hemispheres 956.6
2720 Male, age 74, both hemispheres 951.1
2788 Male, age 74, unknown 941.5
2162 Male, age 80, both hemispheres 938.0
Medial olivary nucleus
nTPM: 833.8
2138 Female, age 91, both hemispheres 1018.5
2851 Male, age 80, both hemispheres 841.4
1962 Male, age 76, both hemispheres 811.3
1943 Male, age 61, both hemispheres 664.0
Medial parabrachial nucleus
nTPM: 964.7
2854 Male, age 80, both hemispheres 1024.2
2156 Male, age 61, both hemispheres 986.7
2463 Female, age 85, right hemisphere 938.9
2786 Male, age 76, both hemispheres 938.6
2170 Female, age 91, both hemispheres 935.1
Medial periolivary nuclei
nTPM: 1125.8
2063 Male, age 76, both hemispheres 1450.4
2171 Female, age 85, both hemispheres 1359.2
2791 Male, age 74, right hemisphere 1066.2
2081 Male, age 80, both hemispheres 884.0
2458 Female, age 91, both hemispheres 869.0
Motor facial nucleus
nTPM: 1124.7
2062 Male, age 76, both hemispheres 1533.9
2795 Female, age 91, both hemispheres 1120.8
2327 Male, age 80, both hemispheres 1095.1
2365 Male, age 74, right hemisphere 1041.5
2697 Female, age 85, both hemispheres 992.9
2126 Male, age 61, both hemispheres 964.2
Motor trigeminal nucleus
nTPM: 964.4
2079 Male, age 80, both hemispheres 1204.5
2309 Male, age 76, both hemispheres 951.5
2560 Male, age 74, both hemispheres 924.8
2335 Male, age 61, both hemispheres 914.3
2321 Female, age 91, both hemispheres 827.2
Nuclei of the trapezoid body
nTPM: 1384.6
2159 Male, age 61, both hemispheres 1972.1
1983 Male, age 76, both hemispheres 1456.8
2735 Female, age 85, both hemispheres 1398.7
2166 Male, age 80, both hemispheres 1091.6
2368 Female, age 91, both hemispheres 1003.7
Paramedian reticular nucleus
nTPM: 1057.2
2050 Female, age 85, both hemispheres 1197.4
2057 Male, age 80, both hemispheres 1085.6
2313 Male, age 61, both hemispheres 1081.7
2052 Male, age 76, both hemispheres 864.2
Pontine nuclei
nTPM: 1239.9
2727 Male, age 61, right hemisphere 1948.2
2787 Female, age 85, both hemispheres 1410.6
1863 Male, age 55, unknown 1374.3
1968 Male, age 76, left hemisphere 1323.0
2109 Female, age 72, unknown 1108.2
2115 Male, age 80, left hemisphere 951.2
2319 Female, age 91, both hemispheres 918.0
2454 Male, age 74, left hemisphere 885.4
Pontine raphe nucleus
nTPM: 1092.4
2122 Female, age 85, midline 1220.0
2853 Male, age 76, midline 964.8
Posteroventral cochlear nucleus
nTPM: 917.2
2752 Female, age 85, both hemispheres 1074.7
2070 Male, age 76, both hemispheres 946.8
2371 Male, age 61, both hemispheres 911.2
2135 Female, age 91, both hemispheres 856.5
2341 Male, age 80, both hemispheres 796.7
Principal sensory trigeminal nucleus
nTPM: 1301.4
2158 Male, age 61, both hemispheres 1897.8
2008 Male, age 80, left hemisphere 1315.4
2324 Male, age 76, both hemispheres 1122.3
2367 Female, age 91, left hemisphere 870.3
Reticular pontine nucleus, caudal
nTPM: 1036.4
2092 Male, age 76, both hemispheres 1255.7
2332 Male, age 80, right hemisphere 1197.3
2457 Female, age 91, both hemispheres 894.2
2559 Male, age 74, both hemispheres 798.4
Reticular pontine nucleus, oral
nTPM: 973.7
2012 Female, age 85, both hemispheres 1148.1
1939 Male, age 80, both hemispheres 961.8
2167 Male, age 76, both hemispheres 958.3
2366 Female, age 91, both hemispheres 928.7
2361 Male, age 74, both hemispheres 871.7
Reticulotegmental nucleus
nTPM: 994.4
2325 Male, age 76, both hemispheres 1141.8
2333 Male, age 80, both hemispheres 1008.5
2322 Female, age 91, both hemispheres 942.4
2452 Male, age 74, both hemispheres 885.1
Spinal trigeminal nucleus, oral
nTPM: 996.0
2737 Female, age 85, both hemispheres 1076.2
2164 Male, age 80, both hemispheres 999.1
1978 Male, age 76, both hemispheres 912.7
Subcoeruleus area
nTPM: 1006.6
2089 Male, age 76, left hemisphere 1153.9
1958 Male, age 80, both hemispheres 1105.4
2323 Female, age 91, left hemisphere 948.8
2369 Female, age 85, left hemisphere 913.3
2451 Male, age 74, both hemispheres 911.3
Superior olive
nTPM: 1103.6
1875 Female, age 85, both hemispheres 1279.4
2020 Male, age 76, both hemispheres 1192.6
2329 Male, age 80, right hemisphere 1083.2
2364 Male, age 74, right hemisphere 1059.8
2561 Female, age 91, both hemispheres 902.7
Superior vestibular nucleus
nTPM: 945.7
2061 Male, age 76, both hemispheres 966.0
2015 Male, age 80, both hemispheres 961.3
2383 Male, age 74, both hemispheres 909.9
Ventral periolivary nuclei
nTPM: 1214.1
2130 Female, age 85, both hemispheres 1426.0
2165 Male, age 80, both hemispheres 1350.2
2023 Male, age 76, both hemispheres 1151.4
2794 Female, age 91, left hemisphere 929.0
Ventrolateral tegmental area, A5 NE cell group
nTPM: 1004.1
1959 Male, age 76, both hemispheres 1212.3
2161 Male, age 80, both hemispheres 1046.2
2449 Male, age 74, both hemispheres 1017.9
2840 Female, age 85, both hemispheres 1007.3
2456 Female, age 91, both hemispheres 922.5
2359 Male, age 61, both hemispheres 818.3

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 1031.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 507.2
FF:10182-103D2 60 years, female 654.2
FF:10165-103B3 76 years, female 360.2
Pons
Scaled Tags Per Million: 1031.8
FF:10033-101E6 18-54 years, mixed 1031.8

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 233.4
Pig sample Sample description nTPM
Pons
nTPM: 233.4
Samples: 4

Max nTPM: 289.1
Min nTPM: 159.4
Sample A Female 272.7
Sample B Female 159.4
Sample C Male 212.3
Sample D Male 289.1

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 9.6
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 9.6
79556636 Antisense, RP_071204_01_A02, Mouse strain C57BL/6J (56 days, male) 12.9
275696 Antisense, RP_040617_01_C08, Mouse strain C57BL/6J (56 days, male) 11.5
73512352 Antisense, RP_050719_02_A05, Mouse strain C57BL/6J (56 days, male) 4.4
71022960 Antisense, RP_050719_02_A05, Mouse strain C57BL/6J (56 days, male) 3.4

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.