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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:926.9 nTPM
HPA:926.9 nTPM
GTEx:404.6 nTPM
FANTOM5:267.3 Scaled Tags Per Million
Pig:250.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 926.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 861.3
2194 Female, age 79, both hemispheres 951.0
1981 Female, age 72, midline 942.5
2048 Male, age 55, midline 862.0
2816 Male, age 47, midline 788.3
2565 Male, age 75, midline 762.7
Cervical spinal cord, dorsal horn
nTPM: 874.6
2173 Female, age 72, unknown 1063.5
2721 Male, age 90, both hemispheres 894.2
2297 Male, age 75, both hemispheres 884.8
2069 Male, age 47, both hemispheres 832.9
1877 Male, age 55, unknown 799.0
2296 Male, age 66, both hemispheres 773.2
Cervical spinal cord, ventral horn
nTPM: 926.9
2295 Male, age 66, both hemispheres 1033.9
2068 Male, age 55, unknown 972.0
2820 Female, age 79, both hemispheres 958.1
2480 Male, age 75, both hemispheres 877.9
2809 Male, age 90, both hemispheres 866.4
2098 Female, age 72, unknown 853.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 404.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 404.6
Samples: 159

Max nTPM: 1150.7
Min nTPM: 122.4
Std nTPM: 159.2
Median nTPM: 375.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1150.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 930.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 928.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 897.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 857.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 823.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 761.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 738.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 710.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 670.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 635.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 632.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 611.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 608.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 602.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 575.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 574.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 573.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 572.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 570.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 556.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 546.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 540.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 539.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 533.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 532.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 526.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 519.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 518.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 517.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 514.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 507.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 506.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 505.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 502.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 493.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 482.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 478.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 476.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 475.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 465.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 461.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 457.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 450.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 447.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 437.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 436.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 436.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 433.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 433.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 432.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 431.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 430.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 428.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 427.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 427.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 422.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 416.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 414.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 413.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 413.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 412.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 408.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 408.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 407.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 405.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 400.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 399.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 399.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 397.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 396.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 394.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 391.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 390.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 381.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 381.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 379.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 378.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 376.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 375.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 374.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 373.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 368.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 362.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 362.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 361.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 356.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 356.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 354.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 353.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 351.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 349.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 349.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 346.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 345.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 341.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 341.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 338.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 338.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 335.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 335.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 333.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 329.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 328.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 325.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 324.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 324.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 318.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 313.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 312.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 311.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 311.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 310.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 309.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 309.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 307.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 306.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 303.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 302.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 299.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 295.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 295.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 294.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 293.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 288.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 287.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 285.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 280.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 279.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 274.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 272.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 270.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 269.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 269.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 263.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 261.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 260.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 259.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 259.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 255.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 254.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 254.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 254.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 252.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 251.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 247.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 243.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 242.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 238.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 238.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 231.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 226.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 212.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 209.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 193.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 163.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 152.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 141.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 122.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 267.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 267.3
FF:10181-103D1 60 years, female 401.9
FF:10159-103A6 76 years, female 132.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 250.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 141.7
Samples: 4

Max nTPM: 178.4
Min nTPM: 99.0
Sample A Female 178.4
Sample B Female 135.7
Sample C Male 99.0
Sample D Male 153.5
Ventral spinal cord
nTPM: 250.6
Samples: 4

Max nTPM: 279.7
Min nTPM: 210.0
Sample A Female 243.8
Sample B Female 279.7
Sample C Male 268.8
Sample D Male 210.0

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