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GAPDH
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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:2828.4 nTPM
HPA:2828.4 nTPM
FANTOM5:3763.4 Scaled Tags Per Million

PONS - HPA Brain RNA-seq
Max nTPM 2828.4
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 2543.8
2301 Female, age 85, both hemispheres 2606.5
2188 Female, age 91, both hemispheres 2584.0
2090 Male, age 80, both hemispheres 2530.5
1984 Male, age 76, both hemispheres 2454.2
Dorsal cochlear nucleus
nTPM: 2569.1
2187 Female, age 91, both hemispheres 2644.5
2802 Male, age 74, right hemisphere 2635.4
2058 Male, age 76, both hemispheres 2603.9
2370 Male, age 61, both hemispheres 2523.4
2378 Male, age 80, both hemispheres 2438.0
Dorsal tegmental nucleus
nTPM: 2683.6
2358 Male, age 61, both hemispheres 2825.4
2083 Male, age 80, both hemispheres 2802.5
2326 Male, age 74, both hemispheres 2610.5
1936 Male, age 76, left hemisphere 2496.0
Dorsolateral tegmental area
nTPM: 2620.0
2751 Female, age 85, both hemispheres 2705.7
2337 Male, age 61, both hemispheres 2695.3
2654 Male, age 80, both hemispheres 2676.2
2141 Male, age 76, both hemispheres 2527.3
2360 Male, age 74, both hemispheres 2495.2
Kolliker-Fuse nucleus
nTPM: 2740.8
2163 Male, age 80, both hemispheres 2878.0
2315 Male, age 76, right hemisphere 2704.9
2793 Female, age 91, left hemisphere 2639.5
Lateral lemniscal nuclei
nTPM: 2655.0
2036 Male, age 80, both hemispheres 2817.9
2169 Male, age 76, both hemispheres 2796.6
2746 Female, age 85, left hemisphere 2655.5
2453 Male, age 74, right hemisphere 2560.6
2320 Female, age 91, left hemisphere 2444.6
Lateral parabrachial nucleus
nTPM: 2677.3
2139 Female, age 85, right hemisphere 2857.3
2790 Male, age 61, both hemispheres 2639.6
2013 Male, age 80, both hemispheres 2621.7
2792 Male, age 76, both hemispheres 2590.4
Lateral vestibular nucleus
nTPM: 2728.9
2184 Male, age 76, both hemispheres 2844.4
2311 Male, age 80, both hemispheres 2613.4
Locus coeruleus
nTPM: 2828.4
2123 Female, age 91, both hemispheres 3156.1
2720 Male, age 74, both hemispheres 2947.1
2014 Male, age 55, unknown 2865.9
2788 Male, age 74, unknown 2761.3
2317 Female, age 72, unknown 2719.5
2162 Male, age 80, both hemispheres 2689.4
1980 Male, age 76, both hemispheres 2659.6
Medial olivary nucleus
nTPM: 2646.8
2138 Female, age 91, both hemispheres 2731.4
1962 Male, age 76, both hemispheres 2673.8
1943 Male, age 61, both hemispheres 2617.1
2851 Male, age 80, both hemispheres 2565.0
Medial parabrachial nucleus
nTPM: 2714.0
2170 Female, age 91, both hemispheres 2918.2
2854 Male, age 80, both hemispheres 2782.5
2156 Male, age 61, both hemispheres 2703.8
2786 Male, age 76, both hemispheres 2588.5
2463 Female, age 85, right hemisphere 2576.8
Medial periolivary nuclei
nTPM: 2668.0
2171 Female, age 85, both hemispheres 2920.2
2063 Male, age 76, both hemispheres 2767.3
2791 Male, age 74, right hemisphere 2724.4
2081 Male, age 80, both hemispheres 2505.4
2458 Female, age 91, both hemispheres 2422.5
Motor facial nucleus
nTPM: 2681.4
2365 Male, age 74, right hemisphere 2831.8
2062 Male, age 76, both hemispheres 2826.5
2697 Female, age 85, both hemispheres 2673.0
2126 Male, age 61, both hemispheres 2596.6
2795 Female, age 91, both hemispheres 2592.8
2327 Male, age 80, both hemispheres 2567.6
Motor trigeminal nucleus
nTPM: 2556.3
2335 Male, age 61, both hemispheres 2665.1
2079 Male, age 80, both hemispheres 2660.3
2560 Male, age 74, both hemispheres 2533.4
2309 Male, age 76, both hemispheres 2503.9
2321 Female, age 91, both hemispheres 2419.0
Nuclei of the trapezoid body
nTPM: 2737.2
2159 Male, age 61, both hemispheres 2926.2
2735 Female, age 85, both hemispheres 2860.0
1983 Male, age 76, both hemispheres 2838.6
2166 Male, age 80, both hemispheres 2629.7
2368 Female, age 91, both hemispheres 2431.6
Paramedian reticular nucleus
nTPM: 2736.0
2050 Female, age 85, both hemispheres 2877.2
2057 Male, age 80, both hemispheres 2757.5
2313 Male, age 61, both hemispheres 2756.1
2052 Male, age 76, both hemispheres 2553.3
Pontine nuclei
nTPM: 2794.1
2787 Female, age 85, both hemispheres 3140.6
1863 Male, age 55, unknown 3074.3
2727 Male, age 61, right hemisphere 2883.1
2109 Female, age 72, unknown 2832.9
1968 Male, age 76, left hemisphere 2707.7
2454 Male, age 74, left hemisphere 2622.7
2115 Male, age 80, left hemisphere 2566.0
2319 Female, age 91, both hemispheres 2525.2
Pontine raphe nucleus
nTPM: 2696.7
2122 Female, age 85, midline 2769.5
2853 Male, age 76, midline 2624.0
Posteroventral cochlear nucleus
nTPM: 2597.9
2752 Female, age 85, both hemispheres 2708.0
2341 Male, age 80, both hemispheres 2622.5
2070 Male, age 76, both hemispheres 2588.3
2135 Female, age 91, both hemispheres 2537.3
2371 Male, age 61, both hemispheres 2533.2
Principal sensory trigeminal nucleus
nTPM: 2696.0
2158 Male, age 61, both hemispheres 2900.8
2324 Male, age 76, both hemispheres 2710.7
2008 Male, age 80, left hemisphere 2692.4
2367 Female, age 91, left hemisphere 2480.2
Reticular pontine nucleus, caudal
nTPM: 2581.1
2092 Male, age 76, both hemispheres 2699.8
2332 Male, age 80, right hemisphere 2671.8
2559 Male, age 74, both hemispheres 2522.1
2457 Female, age 91, both hemispheres 2430.7
Reticular pontine nucleus, oral
nTPM: 2670.7
1939 Male, age 80, both hemispheres 2802.1
2167 Male, age 76, both hemispheres 2745.5
2012 Female, age 85, both hemispheres 2717.8
2361 Male, age 74, both hemispheres 2573.8
2366 Female, age 91, both hemispheres 2514.3
Reticulotegmental nucleus
nTPM: 2655.1
2325 Male, age 76, both hemispheres 2742.8
2322 Female, age 91, both hemispheres 2682.6
2333 Male, age 80, both hemispheres 2637.4
2452 Male, age 74, both hemispheres 2557.7
Spinal trigeminal nucleus, oral
nTPM: 2604.8
2164 Male, age 80, both hemispheres 2723.2
2737 Female, age 85, both hemispheres 2652.3
1978 Male, age 76, both hemispheres 2438.8
Subcoeruleus area
nTPM: 2644.4
1958 Male, age 80, both hemispheres 2744.3
2323 Female, age 91, left hemisphere 2740.3
2369 Female, age 85, left hemisphere 2678.0
2089 Male, age 76, left hemisphere 2531.0
2451 Male, age 74, both hemispheres 2528.3
Superior olive
nTPM: 2646.1
1875 Female, age 85, both hemispheres 2802.2
2364 Male, age 74, right hemisphere 2766.7
2020 Male, age 76, both hemispheres 2608.6
2329 Male, age 80, right hemisphere 2574.1
2561 Female, age 91, both hemispheres 2478.8
Superior vestibular nucleus
nTPM: 2647.8
2383 Male, age 74, both hemispheres 2705.6
2061 Male, age 76, both hemispheres 2626.2
2015 Male, age 80, both hemispheres 2611.5
Ventral periolivary nuclei
nTPM: 2691.9
2130 Female, age 85, both hemispheres 2895.6
2165 Male, age 80, both hemispheres 2866.1
2023 Male, age 76, both hemispheres 2564.4
2794 Female, age 91, left hemisphere 2441.6
Ventrolateral tegmental area, A5 NE cell group
nTPM: 2649.6
2359 Male, age 61, both hemispheres 2794.0
2840 Female, age 85, both hemispheres 2774.3
2449 Male, age 74, both hemispheres 2681.2
1959 Male, age 76, both hemispheres 2669.8
2161 Male, age 80, both hemispheres 2591.1
2456 Female, age 91, both hemispheres 2387.4

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 3763.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 1598.8
FF:10182-103D2 60 years, female 1895.7
FF:10165-103B3 76 years, female 1301.8
Pons
Scaled Tags Per Million: 3763.4
FF:10033-101E6 18-54 years, mixed 3763.4

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