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GAPDH
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:2605.9 nTPM
HPA:2605.9 nTPM
GTEx:3067.4 nTPM
FANTOM5:1114.6 Scaled Tags Per Million
Mouse:0.0 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 2605.9
Sample id Sample description nTPM
Amygdala
nTPM: 2605.9
2814 Male, age 76, right hemisphere 2775.2
2695 Female, age 67, right hemisphere 2654.2
2514 Male, age 75, right hemisphere 2623.9
1987 Female, age 91, left hemisphere 2501.2
2517 Female, age 94, left hemisphere 2475.1
Basal amygdala
nTPM: 2492.6
2609 Male, age 75, right hemisphere 2663.1
2243 Female, age 91, right hemisphere 2561.3
2110 Male, age 80, left hemisphere 2535.4
1955 Male, age 76, both hemispheres 2519.7
2685 Female, age 94, left hemisphere 2431.2
2827 Female, age 67, right hemisphere 2245.1
Central amygdala
nTPM: 2580.1
1905 Male, age 76, both hemispheres 2693.2
2826 Female, age 94, left hemisphere 2660.1
2515 Male, age 75, right hemisphere 2608.5
2239 Male, age 80, left hemisphere 2517.0
2701 Female, age 91, right hemisphere 2421.7
Corticomedial amygdala
nTPM: 2488.8
2428 Male, age 75, right hemisphere 2652.9
2829 Male, age 80, left hemisphere 2545.2
2242 Female, age 91, right hemisphere 2507.8
2240 Male, age 76, both hemispheres 2480.7
2429 Female, age 94, left hemisphere 2461.5
2535 Female, age 67, right hemisphere 2284.9
Lateral amygdala
nTPM: 2492.4
1883 Male, age 76, both hemispheres 2695.9
2534 Female, age 94, left hemisphere 2628.7
2516 Male, age 75, right hemisphere 2607.1
2256 Male, age 80, left hemisphere 2383.1
2255 Female, age 91, right hemisphere 2376.2
2830 Female, age 67, right hemisphere 2263.7
Stria terminalis, bed nucleus
nTPM: 2447.1
1974 Female, age 91, both hemispheres 2593.6
2486 Female, age 94, both hemispheres 2381.8
2201 Male, age 74, unknown 2366.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 3067.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 3067.4
Samples: 152

Max nTPM: 6183.5
Min nTPM: 1633.8
Std nTPM: 735.6
Median nTPM: 2969.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 6183.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 5576.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 5186.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 4986.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 4760.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 4670.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 4515.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 4496.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 4472.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 4325.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 4315.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 4184.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 4073.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 4039.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 3971.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 3823.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 3816.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 3802.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 3796.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 3786.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 3745.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 3694.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 3688.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 3685.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 3675.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 3673.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 3657.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 3647.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 3632.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 3631.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 3626.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 3615.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 3564.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 3532.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 3530.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 3517.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 3454.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 3442.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 3439.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 3423.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 3420.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 3392.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 3379.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 3361.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 3347.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 3318.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 3295.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 3294.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 3286.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 3279.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 3267.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 3266.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 3216.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 3201.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 3197.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 3180.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 3174.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 3163.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 3152.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 3133.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 3124.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 3107.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 3104.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 3081.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 3071.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 3058.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 3050.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 3039.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 3003.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 2993.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 2988.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 2987.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 2987.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 2981.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 2981.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 2974.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 2965.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 2963.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 2961.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 2955.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 2947.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 2939.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 2918.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2904.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 2896.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 2860.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 2834.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2812.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 2796.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 2791.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 2784.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 2782.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 2766.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 2759.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 2732.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 2726.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 2717.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 2703.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 2701.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 2692.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 2689.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 2682.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 2681.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2668.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 2660.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 2658.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 2649.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 2641.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 2638.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 2637.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 2622.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 2620.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 2618.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 2613.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 2593.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 2591.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 2578.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 2572.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 2568.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 2546.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 2526.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 2524.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 2507.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 2493.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 2469.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 2448.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 2427.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 2425.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 2406.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 2404.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 2381.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 2375.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 2365.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 2356.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 2309.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 2284.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 2279.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 2278.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 2218.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 2208.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 2160.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 2149.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 2144.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 2126.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 2062.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 2056.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1941.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1909.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1897.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1847.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 1659.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1633.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1114.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1114.6
FF:10151-102I7 76 years, female 1114.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 0.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

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