MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:2861.3 nTPM
HPA:2861.3 nTPM
GTEx:3446.6 nTPM
FANTOM5:1236.0 Scaled Tags Per Million
Mouse:0.0 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 2861.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 2519.0
2019 Male, age 18, unknown 2618.5
2411 Female, age 72, unknown 2580.5
2828 Female, age 72, unknown 2557.2
1827 Male, age 72, unknown 2552.6
2586 Male, age 75, left hemisphere 2535.7
2666 Male, age 74, left hemisphere 2509.1
1870 Female, age 42, unknown 2502.1
1833 Male, age 53, unknown 2490.6
2219 Male, age 76, both hemispheres 2423.0
1830 Male, age 51, unknown 2420.8
Dorsal raphe nucleus
nTPM: 2590.7
2298 Female, age 72, unknown 2714.1
2047 Male, age 72, unknown 2630.3
1828 Male, age 53, unknown 2620.1
2750 Male, age 76, both hemispheres 2584.9
2016 Female, age 72, unknown 2404.1
Inferior colliculus
nTPM: 2560.6
2097 Female, age 72, unknown 2680.0
1890 Male, age 53, unknown 2629.1
1848 Female, age 42, unknown 2498.0
2849 Male, age 72, unknown 2435.2
Median raphe nucleus
nTPM: 2861.3
2220 Male, age 76, midline 2861.3
Pedunculopontine tegmental nucleus
nTPM: 2711.1
2338 Male, age 61, both hemispheres 2820.5
2334 Male, age 80, both hemispheres 2721.7
1921 Female, age 85, both hemispheres 2591.2
Periaquaductal grey, anterior
nTPM: 2548.0
1795 Male, age 51, unknown 2556.9
1947 Male, age 18, unknown 2552.9
2502 Female, age 75, unknown 2534.2
Periaquaductal grey, dorsal
nTPM: 2402.3
1831 Male, age 72, unknown 2440.9
2850 Male, age 76, both hemispheres 2429.1
1840 Male, age 53, unknown 2386.5
2464 Female, age 72, unknown 2352.6
Periaquaductal grey, lateral
nTPM: 2399.0
2272 Male, age 74, both hemispheres 2462.6
2053 Male, age 18, unknown 2396.8
2140 Male, age 76, both hemispheres 2337.6
Pretectal area
nTPM: 2608.3
1817 Female, age 42, unknown 2849.9
1944 Female, age 72, unknown 2835.9
1816 Male, age 51, unknown 2757.4
2007 Male, age 72, unknown 2752.1
2667 Female, age 75, unknown 2676.5
1815 Male, age 53, unknown 2634.4
2273 Male, age 74, both hemispheres 2516.1
2224 Female, age 72, unknown 2490.2
2407 Male, age 75, both hemispheres 2442.0
2825 Male, age 18, unknown 2411.8
2316 Male, age 76, right hemisphere 2325.5
Red nucleus
nTPM: 2584.7
1821 Female, age 72, unknown 2763.6
1954 Female, age 42, unknown 2641.1
1865 Male, age 51, unknown 2637.3
2785 Male, age 18, unknown 2626.5
2725 Female, age 75, unknown 2623.0
2823 Male, age 76, right hemisphere 2586.7
2503 Female, age 72, unknown 2584.6
2769 Male, age 72, unknown 2582.9
1904 Male, age 53, unknown 2567.1
2227 Male, age 72, unknown 2558.7
2588 Male, age 74, left hemisphere 2448.0
2584 Male, age 75, left hemisphere 2396.8
Substantia nigra
nTPM: 2779.1
1916 Female, age 42, unknown 3254.1
1851 Male, age 51, unknown 2932.6
1889 Female, age 72, unknown 2840.9
1941 Male, age 53, unknown 2832.5
2699 Male, age 18, unknown 2785.1
2241 Male, age 72, unknown 2784.7
2665 Male, age 74, both hemispheres 2682.0
2409 Female, age 72, unknown 2680.7
2590 Female, age 75, unknown 2505.3
2583 Male, age 75, right hemisphere 2492.8
Superior colliculus
nTPM: 2516.2
2087 Female, age 72, unknown 2706.7
2668 Female, age 75, unknown 2639.3
1796 Male, age 53, unknown 2589.8
2587 Male, age 74, left hemisphere 2536.0
2261 Male, age 18, unknown 2530.6
2664 Male, age 75, both hemispheres 2494.5
1913 Female, age 42, unknown 2483.9
1895 Male, age 76, right hemisphere 2409.2
1839 Male, age 51, unknown 2386.0
1995 Male, age 72, unknown 2385.6
Ventral tegmental area
nTPM: 2704.7
1915 Female, age 42, unknown 2898.9
2410 Female, age 72, unknown 2867.3
2218 Male, age 76, both hemispheres 2798.1
2223 Female, age 72, unknown 2608.1
1942 Male, age 51, unknown 2595.4
2021 Male, age 53, unknown 2460.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 3446.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3446.6
Samples: 139

Max nTPM: 6826.7
Min nTPM: 1828.9
Std nTPM: 812.2
Median nTPM: 3329.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 6826.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 5696.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 5210.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 5139.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 5079.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 5040.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 4971.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 4814.5
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 4693.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 4681.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 4640.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1236.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1236.0
FF:10158-103A5 76 years, female 1236.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.