We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
GAPDH
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • GAPDH
BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:2386.8 nTPM
GTEx:2386.8 nTPM
FANTOM5:2386.8 Scaled Tags Per Million
Mouse:0.0 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2386.8
GTEx sample id Sample description nTPM
Retina
Average nTPM: 2386.8
Samples: 105

Max nTPM: 5586.2
Min nTPM: 473.0
Std nTPM: 998.0
Median nTPM:
218_1 71 years, female 5586.2
322_1 76 years, male 5073.9
452_1 88 years, female 4521.6
386_1 76 years, male 4464.1
379_1 60 years, male 4244.6
317_1 60 years, male 4237.5
173_1 67 years, male 4232.1
6_1 73 years, female 4212.1
353_1 82 years, female 3874.6
375_1 74 years, female 3630.8
321_1 62 years, female 3577.9
2_1 77 years, female 3528.0
295_1 61 years, female 3469.7
4_1 88 years, female 3445.6
377_1 82 years, female 3427.1
41_1 94 years, female 3413.5
145_1 84 years, male 3407.7
351_1 91 years, male 3326.0
17_1 71 years, male 3297.1
384_1 83 years, male 3288.3
318_1 68 years, male 3266.9
506_1 65 years, male 3207.2
447_1 81 years, male 3180.6
354_1 81 years, female 3175.9
316_1 62 years, male 3169.0
307_1 66 years, female 3140.7
350_1 84 years, female 3128.4
163_1 78 years, male 3082.4
35_1 74 years, female 2959.1
319_1 81 years, male 2913.4
320_1 89 years, female 2820.7
348_1 84 years, male 2813.8
308_1 70 years, female 2804.1
291_1 76 years, male 2796.4
237_1 82 years, male 2726.8
347_1 72 years, male 2716.1
349_1 83 years, male 2635.3
177_1 74 years, male 2606.5
243_1 75 years, male 2545.4
264_1 73 years, female 2497.9
376_1 75 years, female 2457.5
18_1 88 years, male 2446.6
311_1 78 years, male 2374.5
404_1 82 years, female 2364.1
335_1 73 years, female 2346.0
139_1 64 years, female 2333.1
288_1 66 years, female 2332.6
356_1 87 years, female 2319.9
389_1 86 years, female 2312.8
518_1 75 years, female 2309.8
425_1 59 years, female 2301.9
352_1 62 years, male 2293.2
189_1 76 years, male 2288.6
172_1 72 years, female 2268.3
293_1 68 years, female 2257.0
314_1 67 years, male 2236.6
394_1 75 years, female 2227.5
526_1 61 years, male 2226.8
120_1 70 years, female 2210.9
137_1 83 years, male 2181.5
292_1 71 years, male 2176.1
396_1 62 years, male 2174.2
503_1 68 years, male 2130.5
517_1 88 years, male 2009.8
495_1 57 years, female 2008.2
405_1 91 years, male 1991.6
109_1 81 years, female 1973.1
153_1 70 years, female 1902.9
117_1 61 years, male 1902.1
286_1 68 years, female 1879.0
251_1 78 years, male 1867.4
115_1 83 years, male 1849.0
254_1 77 years, female 1837.2
42_1 85 years, male 1801.3
246_1 77 years, male 1776.7
265_1 87 years, male 1735.7
355_1 70 years, female 1731.2
468_1 89 years, male 1721.0
119_1 70 years, female 1707.7
126_1 63 years, male 1665.5
406_1 79 years, male 1662.8
324_1 76 years, male 1639.5
315_1 62 years, female 1623.7
480_1 63 years, male 1583.9
43_1 64 years, female 1558.7
99_1 64 years, male 1556.7
313_1 79 years, female 1479.2
266_1 85 years, male 1470.1
142_1 61 years, female 1460.5
499_1 55 years, female 1417.3
229_1 69 years, female 1407.4
217_1 76 years, male 1406.0
9_1 66 years, female 1362.2
501_1 88 years, male 1347.6
81_1 67 years, male 1271.0
162_1 79 years, female 1099.6
89_1 63 years, male 989.2
414_1 84 years, female 912.8
466_1 57 years, female 891.6
32_1 67 years, male 838.8
415_1 77 years, female 833.8
149_1 88 years, male 744.1
490_1 67 years, female 625.2
491_1 89 years, female 586.2
413_1 59 years, female 473.0
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 2386.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 2386.8
FF:10030-101E3 24-65 years, mixed 2386.8

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 0.0
Mouse sample Sample description nTPM
Retina
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.