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GAPDH
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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:2670.8 nTPM
HPA:2670.8 nTPM
GTEx:2932.6 nTPM
FANTOM5:1515.4 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 2670.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 2622.8
1981 Female, age 72, midline 2827.6
2565 Male, age 75, midline 2662.4
2194 Female, age 79, both hemispheres 2634.7
2048 Male, age 55, midline 2506.9
2816 Male, age 47, midline 2482.3
Cervical spinal cord, dorsal horn
nTPM: 2654.6
2173 Female, age 72, unknown 3024.2
2296 Male, age 66, both hemispheres 2746.0
2069 Male, age 47, both hemispheres 2685.0
2721 Male, age 90, both hemispheres 2560.4
1877 Male, age 55, unknown 2467.2
2297 Male, age 75, both hemispheres 2445.0
Cervical spinal cord, ventral horn
nTPM: 2670.8
2098 Female, age 72, unknown 2858.2
2295 Male, age 66, both hemispheres 2651.7
2068 Male, age 55, unknown 2646.4
2809 Male, age 90, both hemispheres 2641.6
2480 Male, age 75, both hemispheres 2632.7
2820 Female, age 79, both hemispheres 2594.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2932.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 2932.6
Samples: 159

Max nTPM: 5844.1
Min nTPM: 1740.1
Std nTPM: 614.3
Median nTPM: 2847.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 5844.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 5678.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 4558.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 4240.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 4080.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 4003.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 3987.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 3979.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 3956.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 3847.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 3837.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 3837.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 3813.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 3795.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 3781.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 3745.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 3709.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 3704.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 3653.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 3625.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 3602.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 3542.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 3506.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 3460.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 3430.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 3407.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 3404.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 3403.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 3370.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 3352.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 3334.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 3319.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 3319.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 3312.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 3296.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 3294.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 3289.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 3285.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 3274.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 3242.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 3235.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 3231.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 3224.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 3208.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 3202.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 3201.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 3183.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 3156.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 3133.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 3120.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 3102.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 3097.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 3079.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 3073.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 3068.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 3047.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 3045.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 3044.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 3035.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 3016.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 3007.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 3005.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 3002.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 3000.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 2988.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 2988.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 2968.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 2952.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 2950.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 2947.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 2943.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 2898.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 2890.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 2882.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 2868.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 2867.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 2852.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 2850.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 2849.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 2847.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 2833.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 2824.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 2817.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 2794.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 2783.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 2779.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 2772.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 2770.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 2765.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 2754.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 2753.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 2748.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 2741.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 2740.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 2713.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 2713.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 2702.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 2697.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 2683.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 2682.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 2681.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2677.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 2663.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 2659.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 2651.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 2635.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 2633.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 2609.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 2602.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 2600.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 2596.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 2588.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 2585.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 2581.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 2574.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 2564.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 2563.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 2562.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 2561.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 2557.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 2538.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 2529.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 2527.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 2516.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 2500.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 2489.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 2481.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 2469.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 2466.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 2463.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 2459.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 2451.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 2444.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 2434.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 2417.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 2410.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 2393.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 2387.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 2379.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 2361.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 2336.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 2302.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 2284.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 2248.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 2244.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 2244.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 2208.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 2171.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 2104.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 2078.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 2078.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 2065.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 2052.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 1995.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 1958.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 1927.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1880.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 1822.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 1740.1
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1515.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1515.4
FF:10159-103A6 76 years, female 1555.9
FF:10181-103D1 60 years, female 1474.9

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