MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:460.4 nTPM
HPA:460.4 nTPM
GTEx:455.0 nTPM
FANTOM5:21.2 Scaled Tags Per Million
Pig:343.0 nTPM
Mouse:840.3 nTPM
Allen mouse:20.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 460.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 416.7
2019 Male, age 18, unknown 449.8
1827 Male, age 72, unknown 434.0
2411 Female, age 72, unknown 427.9
2666 Male, age 74, left hemisphere 426.2
2586 Male, age 75, left hemisphere 418.7
2219 Male, age 76, both hemispheres 418.6
2828 Female, age 72, unknown 413.3
1870 Female, age 42, unknown 399.7
1833 Male, age 53, unknown 393.6
1830 Male, age 51, unknown 384.6
Dorsal raphe nucleus
nTPM: 417.3
2298 Female, age 72, unknown 450.8
1828 Male, age 53, unknown 426.9
2047 Male, age 72, unknown 415.3
2750 Male, age 76, both hemispheres 413.3
2016 Female, age 72, unknown 380.2
Inferior colliculus
nTPM: 410.8
2097 Female, age 72, unknown 445.2
1890 Male, age 53, unknown 416.8
1848 Female, age 42, unknown 398.1
2849 Male, age 72, unknown 382.9
Median raphe nucleus
nTPM: 432.2
2220 Male, age 76, midline 432.2
Pedunculopontine tegmental nucleus
nTPM: 428.0
1921 Female, age 85, both hemispheres 434.5
2334 Male, age 80, both hemispheres 432.6
2338 Male, age 61, both hemispheres 416.8
Periaquaductal grey, anterior
nTPM: 421.0
1795 Male, age 51, unknown 436.2
1947 Male, age 18, unknown 414.7
2502 Female, age 75, unknown 412.0
Periaquaductal grey, dorsal
nTPM: 396.5
1831 Male, age 72, unknown 400.4
2464 Female, age 72, unknown 398.0
2850 Male, age 76, both hemispheres 394.1
1840 Male, age 53, unknown 393.7
Periaquaductal grey, lateral
nTPM: 390.1
2272 Male, age 74, both hemispheres 394.3
2053 Male, age 18, unknown 389.1
2140 Male, age 76, both hemispheres 386.9
Pretectal area
nTPM: 460.4
1816 Male, age 51, unknown 561.6
1944 Female, age 72, unknown 535.4
1817 Female, age 42, unknown 522.8
2007 Male, age 72, unknown 503.7
1815 Male, age 53, unknown 472.7
2667 Female, age 75, unknown 468.6
2224 Female, age 72, unknown 415.5
2273 Male, age 74, both hemispheres 404.4
2316 Male, age 76, right hemisphere 397.3
2825 Male, age 18, unknown 396.4
2407 Male, age 75, both hemispheres 385.6
Red nucleus
nTPM: 415.7
2785 Male, age 18, unknown 447.1
1821 Female, age 72, unknown 442.1
2725 Female, age 75, unknown 421.8
2588 Male, age 74, left hemisphere 418.4
2503 Female, age 72, unknown 415.0
1954 Female, age 42, unknown 414.3
1865 Male, age 51, unknown 410.8
2823 Male, age 76, right hemisphere 409.9
1904 Male, age 53, unknown 407.5
2769 Male, age 72, unknown 406.0
2227 Male, age 72, unknown 405.6
2584 Male, age 75, left hemisphere 389.5
Substantia nigra
nTPM: 440.4
1916 Female, age 42, unknown 487.6
1889 Female, age 72, unknown 484.7
2665 Male, age 74, both hemispheres 451.3
1851 Male, age 51, unknown 450.2
2241 Male, age 72, unknown 448.6
1941 Male, age 53, unknown 443.9
2409 Female, age 72, unknown 428.3
2590 Female, age 75, unknown 406.1
2699 Male, age 18, unknown 405.5
2583 Male, age 75, right hemisphere 397.7
Superior colliculus
nTPM: 424.2
2087 Female, age 72, unknown 509.2
2261 Male, age 18, unknown 452.8
2668 Female, age 75, unknown 438.4
1796 Male, age 53, unknown 437.2
1913 Female, age 42, unknown 420.5
2587 Male, age 74, left hemisphere 406.8
1895 Male, age 76, right hemisphere 404.3
1995 Male, age 72, unknown 402.0
1839 Male, age 51, unknown 389.3
2664 Male, age 75, both hemispheres 381.8
Ventral tegmental area
nTPM: 424.3
2410 Female, age 72, unknown 444.4
1915 Female, age 42, unknown 443.2
2218 Male, age 76, both hemispheres 435.9
2223 Female, age 72, unknown 415.4
1942 Male, age 51, unknown 407.0
2021 Male, age 53, unknown 400.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 455.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 455.0
Samples: 139

Max nTPM: 911.8
Min nTPM: 216.4
Std nTPM: 147.4
Median nTPM: 425.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 911.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 900.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 841.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 839.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 824.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 755.7
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 745.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 738.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 717.8
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 692.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 680.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.2
FF:10158-103A5 76 years, female 21.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 343.0
Pig sample Sample description nTPM
Midbrain
nTPM: 306.2
Samples: 4

Max nTPM: 394.6
Min nTPM: 241.7
Sample A Female 241.7
Sample B Female 276.4
Sample C Male 394.6
Sample D Male 312.0
Periaqueductal gray
nTPM: 249.5
Samples: 3

Max nTPM: 294.1
Min nTPM: 211.2
Sample B Female 243.2
Sample C Male 294.1
Sample D Male 211.2
Substantia nigra
nTPM: 271.2
Samples: 4

Max nTPM: 366.2
Min nTPM: 182.2
Sample A Female 366.2
Sample B Female 209.5
Sample C Male 326.8
Sample D Male 182.2
Superior colliculi
nTPM: 343.1
Samples: 4

Max nTPM: 429.3
Min nTPM: 235.3
Sample A Female 381.6
Sample B Female 235.3
Sample C Male 429.3
Sample D Male 326.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 840.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 840.3
Samples: 4

Max nTPM: 884.5
Min nTPM: 805.1
Sample A Male 833.9
Sample B Male 837.6
Sample C Female 805.1
Sample D Female 884.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 20.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 20.2
70191997 Antisense, RP_050517_01_A08, Mouse strain C57BL/6J (56 days, male) 20.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.