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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:429.7 nTPM
HPA:429.7 nTPM
GTEx:296.6 nTPM
FANTOM5:21.1 Scaled Tags Per Million
Pig:251.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 429.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 418.7
1981 Female, age 72, midline 431.9
2194 Female, age 79, both hemispheres 429.8
2565 Male, age 75, midline 425.5
2816 Male, age 47, midline 407.8
2048 Male, age 55, midline 398.6
Cervical spinal cord, dorsal horn
nTPM: 423.3
2173 Female, age 72, unknown 449.8
2297 Male, age 75, both hemispheres 433.2
2069 Male, age 47, both hemispheres 427.4
2296 Male, age 66, both hemispheres 422.1
2721 Male, age 90, both hemispheres 406.7
1877 Male, age 55, unknown 400.6
Cervical spinal cord, ventral horn
nTPM: 429.7
2480 Male, age 75, both hemispheres 448.2
2068 Male, age 55, unknown 432.3
2809 Male, age 90, both hemispheres 431.9
2820 Female, age 79, both hemispheres 422.9
2098 Female, age 72, unknown 422.7
2295 Male, age 66, both hemispheres 420.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 296.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 296.6
Samples: 159

Max nTPM: 730.1
Min nTPM: 111.9
Std nTPM: 77.4
Median nTPM: 273.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 730.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 551.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 522.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 481.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 472.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 462.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 456.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 449.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 435.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 431.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 426.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 419.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 416.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 413.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 412.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 401.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 400.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 396.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 389.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 387.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 386.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 383.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 380.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 377.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 371.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 365.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 362.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 361.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 351.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 349.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 348.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 345.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 344.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 342.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 332.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 330.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 327.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 326.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 325.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 317.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 317.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 316.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 315.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 314.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 312.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 312.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 310.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 308.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 308.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 308.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 307.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 306.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 306.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 304.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 303.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 300.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 298.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 296.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 295.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 295.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 294.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 293.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 292.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 290.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 288.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 287.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 287.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 286.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 285.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 282.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 282.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 281.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 280.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 280.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 279.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 279.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 279.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 277.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 274.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 273.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 272.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 271.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 271.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 271.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 270.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 269.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 269.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 265.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 265.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 265.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 265.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 263.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 263.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 263.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 262.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 261.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 261.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 261.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 261.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 260.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 260.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 259.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 259.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 259.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 258.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 258.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 258.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 258.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 258.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 257.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 255.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 255.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 254.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 254.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 254.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 252.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 252.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 251.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 251.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 251.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 250.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 249.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 249.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 246.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 246.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 246.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 246.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 245.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 245.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 244.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 243.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 242.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 242.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 241.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 240.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 238.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 238.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 237.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 234.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 232.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 231.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 229.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 229.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 229.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 227.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 227.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 225.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 223.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 222.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 217.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 216.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 208.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 203.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 197.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 196.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 194.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 191.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 177.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 111.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 21.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 21.1
FF:10159-103A6 76 years, female 21.5
FF:10181-103D1 60 years, female 20.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 251.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 219.3
Samples: 4

Max nTPM: 246.5
Min nTPM: 189.4
Sample A Female 203.4
Sample B Female 189.4
Sample C Male 237.7
Sample D Male 246.5
Ventral spinal cord
nTPM: 251.6
Samples: 4

Max nTPM: 290.5
Min nTPM: 221.3
Sample A Female 221.3
Sample B Female 270.0
Sample C Male 290.5
Sample D Male 224.5

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