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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:467.2 nTPM
HPA:467.2 nTPM
FANTOM5:34.1 Scaled Tags Per Million
Pig:386.9 nTPM
Allen mouse:14.3 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 467.2
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 409.3
1984 Male, age 76, both hemispheres 424.0
2090 Male, age 80, both hemispheres 411.0
2188 Female, age 91, both hemispheres 409.6
2301 Female, age 85, both hemispheres 392.5
Dorsal cochlear nucleus
nTPM: 422.2
2802 Male, age 74, right hemisphere 450.7
2058 Male, age 76, both hemispheres 427.3
2187 Female, age 91, both hemispheres 425.4
2370 Male, age 61, both hemispheres 409.9
2378 Male, age 80, both hemispheres 397.8
Dorsal tegmental nucleus
nTPM: 421.2
2083 Male, age 80, both hemispheres 446.6
2326 Male, age 74, both hemispheres 422.1
1936 Male, age 76, left hemisphere 409.1
2358 Male, age 61, both hemispheres 407.1
Dorsolateral tegmental area
nTPM: 423.7
2654 Male, age 80, both hemispheres 445.9
2751 Female, age 85, both hemispheres 439.2
2141 Male, age 76, both hemispheres 425.6
2360 Male, age 74, both hemispheres 406.1
2337 Male, age 61, both hemispheres 401.5
Kolliker-Fuse nucleus
nTPM: 425.6
2163 Male, age 80, both hemispheres 450.2
2315 Male, age 76, right hemisphere 423.1
2793 Female, age 91, left hemisphere 403.5
Lateral lemniscal nuclei
nTPM: 419.0
2169 Male, age 76, both hemispheres 446.1
2453 Male, age 74, right hemisphere 429.5
2746 Female, age 85, left hemisphere 424.3
2036 Male, age 80, both hemispheres 406.5
2320 Female, age 91, left hemisphere 388.8
Lateral parabrachial nucleus
nTPM: 422.4
2139 Female, age 85, right hemisphere 458.1
2790 Male, age 61, both hemispheres 417.2
2013 Male, age 80, both hemispheres 414.7
2792 Male, age 76, both hemispheres 399.6
Lateral vestibular nucleus
nTPM: 426.0
2184 Male, age 76, both hemispheres 443.3
2311 Male, age 80, both hemispheres 408.6
Locus coeruleus
nTPM: 467.2
2123 Female, age 91, both hemispheres 544.3
2014 Male, age 55, unknown 483.2
2788 Male, age 74, unknown 463.6
2720 Male, age 74, both hemispheres 460.7
2317 Female, age 72, unknown 449.6
1980 Male, age 76, both hemispheres 440.1
2162 Male, age 80, both hemispheres 428.9
Medial olivary nucleus
nTPM: 404.7
2138 Female, age 91, both hemispheres 434.3
1962 Male, age 76, both hemispheres 404.4
2851 Male, age 80, both hemispheres 395.8
1943 Male, age 61, both hemispheres 384.2
Medial parabrachial nucleus
nTPM: 429.8
2170 Female, age 91, both hemispheres 452.2
2854 Male, age 80, both hemispheres 429.7
2463 Female, age 85, right hemisphere 425.4
2156 Male, age 61, both hemispheres 423.6
2786 Male, age 76, both hemispheres 417.8
Medial periolivary nuclei
nTPM: 432.2
2171 Female, age 85, both hemispheres 474.2
2063 Male, age 76, both hemispheres 468.6
2791 Male, age 74, right hemisphere 428.9
2081 Male, age 80, both hemispheres 399.0
2458 Female, age 91, both hemispheres 390.1
Motor facial nucleus
nTPM: 428.6
2062 Male, age 76, both hemispheres 465.6
2365 Male, age 74, right hemisphere 434.2
2697 Female, age 85, both hemispheres 423.5
2126 Male, age 61, both hemispheres 417.3
2327 Male, age 80, both hemispheres 415.6
2795 Female, age 91, both hemispheres 415.6
Motor trigeminal nucleus
nTPM: 413.0
2079 Male, age 80, both hemispheres 430.3
2335 Male, age 61, both hemispheres 419.5
2560 Male, age 74, both hemispheres 412.8
2309 Male, age 76, both hemispheres 409.1
2321 Female, age 91, both hemispheres 393.1
Nuclei of the trapezoid body
nTPM: 444.2
2159 Male, age 61, both hemispheres 487.1
2735 Female, age 85, both hemispheres 463.5
1983 Male, age 76, both hemispheres 463.0
2166 Male, age 80, both hemispheres 414.9
2368 Female, age 91, both hemispheres 392.8
Paramedian reticular nucleus
nTPM: 443.9
2050 Female, age 85, both hemispheres 467.5
2057 Male, age 80, both hemispheres 453.3
2313 Male, age 61, both hemispheres 448.0
2052 Male, age 76, both hemispheres 406.8
Pontine nuclei
nTPM: 451.1
1863 Male, age 55, unknown 505.9
2727 Male, age 61, right hemisphere 493.6
2787 Female, age 85, both hemispheres 493.2
2109 Female, age 72, unknown 461.0
1968 Male, age 76, left hemisphere 426.8
2454 Male, age 74, left hemisphere 417.8
2115 Male, age 80, left hemisphere 407.7
2319 Female, age 91, both hemispheres 402.6
Pontine raphe nucleus
nTPM: 449.5
2122 Female, age 85, midline 467.8
2853 Male, age 76, midline 431.1
Posteroventral cochlear nucleus
nTPM: 423.5
2752 Female, age 85, both hemispheres 464.1
2070 Male, age 76, both hemispheres 433.3
2341 Male, age 80, both hemispheres 415.4
2371 Male, age 61, both hemispheres 404.1
2135 Female, age 91, both hemispheres 400.6
Principal sensory trigeminal nucleus
nTPM: 433.3
2158 Male, age 61, both hemispheres 489.6
2008 Male, age 80, left hemisphere 427.6
2324 Male, age 76, both hemispheres 421.6
2367 Female, age 91, left hemisphere 394.1
Reticular pontine nucleus, caudal
nTPM: 424.4
2092 Male, age 76, both hemispheres 441.9
2332 Male, age 80, right hemisphere 431.4
2559 Male, age 74, both hemispheres 418.6
2457 Female, age 91, both hemispheres 405.4
Reticular pontine nucleus, oral
nTPM: 428.1
1939 Male, age 80, both hemispheres 440.9
2012 Female, age 85, both hemispheres 440.0
2361 Male, age 74, both hemispheres 434.7
2167 Male, age 76, both hemispheres 425.0
2366 Female, age 91, both hemispheres 400.2
Reticulotegmental nucleus
nTPM: 433.0
2325 Male, age 76, both hemispheres 443.8
2452 Male, age 74, both hemispheres 437.7
2333 Male, age 80, both hemispheres 426.7
2322 Female, age 91, both hemispheres 423.7
Spinal trigeminal nucleus, oral
nTPM: 426.5
2737 Female, age 85, both hemispheres 448.5
2164 Male, age 80, both hemispheres 431.0
1978 Male, age 76, both hemispheres 400.1
Subcoeruleus area
nTPM: 436.0
2323 Female, age 91, left hemisphere 463.7
1958 Male, age 80, both hemispheres 439.3
2451 Male, age 74, both hemispheres 436.4
2369 Female, age 85, left hemisphere 422.9
2089 Male, age 76, left hemisphere 417.7
Superior olive
nTPM: 423.5
1875 Female, age 85, both hemispheres 461.9
2364 Male, age 74, right hemisphere 428.5
2020 Male, age 76, both hemispheres 422.2
2329 Male, age 80, right hemisphere 412.9
2561 Female, age 91, both hemispheres 391.8
Superior vestibular nucleus
nTPM: 428.9
2383 Male, age 74, both hemispheres 433.9
2061 Male, age 76, both hemispheres 430.0
2015 Male, age 80, both hemispheres 422.8
Ventral periolivary nuclei
nTPM: 432.2
2165 Male, age 80, both hemispheres 460.0
2130 Female, age 85, both hemispheres 449.3
2023 Male, age 76, both hemispheres 419.1
2794 Female, age 91, left hemisphere 400.2
Ventrolateral tegmental area, A5 NE cell group
nTPM: 418.1
2840 Female, age 85, both hemispheres 432.5
2359 Male, age 61, both hemispheres 428.6
2449 Male, age 74, both hemispheres 428.1
1959 Male, age 76, both hemispheres 424.1
2161 Male, age 80, both hemispheres 412.0
2456 Female, age 91, both hemispheres 383.5

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 34.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 27.1
FF:10182-103D2 60 years, female 30.5
FF:10165-103B3 76 years, female 23.6
Pons
Scaled Tags Per Million: 34.1
FF:10033-101E6 18-54 years, mixed 34.1

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 386.9
Pig sample Sample description nTPM
Pons
nTPM: 386.9
Samples: 4

Max nTPM: 471.1
Min nTPM: 284.7
Sample A Female 430.9
Sample B Female 284.7
Sample C Male 360.8
Sample D Male 471.1

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 14.3
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 14.3
70191997 Antisense, RP_050517_01_A08, Mouse strain C57BL/6J (56 days, male) 14.3

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by the Knut & Alice Wallenberg Foundation.