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RPS12
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  • RPS12
PATHOLOGY CERVICAL CANCER Show tissue menu
BREAST CANCER CARCINOID CERVICAL CANCER COLORECTAL CANCER ENDOMETRIAL CANCER GLIOMA HEAD AND NECK CANCER LIVER CANCER LUNG CANCER LYMPHOMA
MELANOMA OVARIAN CANCER PANCREATIC CANCER PROSTATE CANCER RENAL CANCER SKIN CANCER STOMACH CANCER TESTIS CANCER THYROID CANCER UROTHELIAL CANCER
ANTIBODIES
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VALIDATION
Dictionary
Cervical cancer
Human pathology
Cervical cancer
CERVICAL CANCER - Interactive survival scatter ploti

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisi

Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.

Read more
RPS12 is not prognostic in cervical cancer


Stage:
Survival analysis
Current cut offi

Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.

:
Best expression cut offi

Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .

When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.

Read more
: 646.14
Median expressioni

Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.

Read more
: N/A
Median follow up timei

Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.

: N/A
P scorei

Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.

N/A
5-year survival highi

5-year survival for patients with higher expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
5-year survival lowi

5-year survival for patients with lower expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
TCGA RNA samplesi

RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.

Average FPKM 1026.7
Number of samples 291
Samples
Sample Description FPKM
TCGA-C5-A1MF-01A 49 years, female, white, alive, 1617 days 7891.4
TCGA-C5-A1ME-01A 41 years, female, white, alive, 1756 days 4621.6
TCGA-FU-A3EO-01A 55 years, female, white, alive, 490 days 3170.0
TCGA-FU-A23K-01A 28 years, female, white, alive, 372 days 2877.8
TCGA-LP-A5U2-01A 30 years, female, asian, alive, 9 days 2822.2
TCGA-EK-A2RK-01A 67 years, female, white, alive, 13 days 2633.0
TCGA-DG-A2KJ-01A 50 years, female, alive, 2893 days 2452.7
TCGA-C5-A3HF-01A 24 years, female, white, dead, 543 days 2407.3
TCGA-C5-A2LX-01A 54 years, female, white, alive, 2526 days 2366.3
TCGA-ZJ-A8QQ-01A 24 years, female, white, alive, 2056 days 2319.5
TCGA-Q1-A5R2-01A 64 years, female, white, alive, 499 days 2280.3
TCGA-VS-A953-01A 63 years, female, dead, 477 days 2188.0
TCGA-Q1-A5R3-01A 56 years, female, white, alive, 485 days 2158.1
TCGA-ZJ-AAXU-01A 51 years, female, white, alive, 5 days 2116.1
TCGA-IR-A3LA-01A 60 years, female, white, alive, 4172 days 2019.7
TCGA-C5-A1MQ-01A 35 years, female, white, alive, 1031 days 2001.1
TCGA-EK-A2H0-01A 24 years, female, white, alive, 1847 days 1995.6
TCGA-JW-A852-01A 42 years, female, white, dead, 252 days 1981.6
TCGA-VS-A954-01A 67 years, female, alive, 1714 days 1978.6
TCGA-C5-A2LT-01A 38 years, female, white, alive, 2226 days 1908.2
TCGA-C5-A1M9-01A 46 years, female, white, dead, 1065 days 1848.3
TCGA-C5-A8YQ-01A 79 years, female, white, dead, 715 days 1833.1
TCGA-C5-A1MJ-01A 61 years, female, white, dead, 14 days 1802.2
TCGA-DS-A7WI-01A 43 years, female, white, dead, 252 days 1799.7
TCGA-EK-A2R8-01A 48 years, female, white, alive, 44 days 1771.2
TCGA-HM-A6W2-01A 35 years, female, black or african american, alive, 287 days 1744.1
TCGA-VS-A9V4-01A 63 years, female, white, dead, 132 days 1708.4
TCGA-C5-A1M7-01A 37 years, female, white, alive, 1409 days 1699.1
TCGA-C5-A1BN-01B 26 years, female, white, dead, 166 days 1679.3
TCGA-RA-A741-01A 34 years, female, white, alive, 444 days 1644.8
TCGA-MA-AA3W-01A 54 years, female, white, alive, 685 days 1628.9
TCGA-VS-A9UV-01A 74 years, female, dead, 104 days 1618.6
TCGA-LP-A7HU-01A 53 years, female, asian, alive, 406 days 1603.4
TCGA-C5-A7X3-01A 70 years, female, white, dead, 284 days 1594.5
TCGA-MY-A5BD-01A 62 years, female, white, alive, 1667 days 1592.3
TCGA-JW-A5VK-01A 43 years, female, black or african american, alive, 623 days 1592.2
TCGA-C5-A2LY-01A 30 years, female, white, alive, 2383 days 1570.7
TCGA-GH-A9DA-01A 27 years, female, white, alive, 540 days 1560.6
TCGA-IR-A3LK-01A 69 years, female, white, dead, 908 days 1558.3
TCGA-EA-A3Y4-01A 40 years, female, white, alive, 1122 days 1556.4
TCGA-HM-A3JK-01A 64 years, female, white, alive, 632 days 1527.4
TCGA-DS-A0VN-01A 47 years, female, white, alive, 2910 days 1525.9
TCGA-JX-A3PZ-01A 25 years, female, white, dead, 642 days 1522.6
TCGA-VS-A8EJ-01A 60 years, female, white, dead, 607 days 1512.9
TCGA-EK-A2R9-01A 58 years, female, white, alive, 4 days 1498.1
TCGA-MA-AA41-01A 33 years, female, white, alive, 254 days 1466.9
TCGA-FU-A3HZ-01A 64 years, female, white, alive, 1103 days 1464.4
TCGA-EK-A2PG-01A 89 years, female, black or african american, alive, 46 days 1455.1
TCGA-C5-A3HE-01A 44 years, female, white, alive, 548 days 1448.2
TCGA-DS-A1OB-01A 45 years, female, white, dead, 861 days 1445.4
TCGA-Q1-A73P-01A 45 years, female, white, alive, 483 days 1417.7
TCGA-EK-A2IR-01A 48 years, female, white, alive, 3442 days 1409.4
TCGA-VS-A8QH-01A 76 years, female, white, dead, 1210 days 1379.2
TCGA-C5-A7UC-01A 48 years, female, white, dead, 523 days 1368.4
TCGA-C5-A2LV-01A 36 years, female, black or african american, alive, 2234 days 1343.2
TCGA-Q1-A73S-01A 33 years, female, white, alive, 688 days 1342.3
TCGA-C5-A8XK-01A 30 years, female, black or african american, alive, 3039 days 1324.5
TCGA-EA-A50E-01A 45 years, female, asian, dead, 227 days 1321.7
TCGA-C5-A7UI-01A 42 years, female, black or african american, dead, 2888 days 1320.0
TCGA-MY-A913-01A 28 years, female, black or african american, alive, 524 days 1315.5
TCGA-EK-A2RO-01A 59 years, female, american indian or alaska native, alive, 2 days 1315.4
TCGA-MY-A5BE-01A 42 years, female, black or african american, alive, 1066 days 1315.2
TCGA-FU-A3NI-01A 45 years, female, white, dead, 638 days 1311.7
TCGA-FU-A770-01A 33 years, female, white, alive, 34 days 1310.0
TCGA-C5-A8YT-01A 36 years, female, white, dead, 633 days 1296.1
TCGA-EA-A78R-01A 54 years, female, asian, alive, 410 days 1291.0
TCGA-VS-A8EI-01A 38 years, female, white, alive, 729 days 1284.4
TCGA-C5-A1BF-01B 46 years, female, white, dead, 570 days 1277.1
TCGA-2W-A8YY-01A 51 years, female, white, alive, 533 days 1271.7
TCGA-VS-A9UD-01A 73 years, female, white, alive, 739 days 1258.4
TCGA-DR-A0ZL-01A 53 years, female, asian, alive, 2669 days 1258.3
TCGA-EX-A69M-01A 62 years, female, white, dead, 253 days 1258.0
TCGA-C5-A2M1-01A 37 years, female, white, alive, 1169 days 1249.1
TCGA-EK-A3GJ-01A 51 years, female, native hawaiian or other pacific islander, alive, 3 days 1241.2
TCGA-VS-A8EC-01A 55 years, female, white, alive, 1415 days 1241.1
TCGA-R2-A69V-01A 42 years, female, white, alive, 596 days 1232.9
TCGA-C5-A7CG-01A 55 years, female, white, alive, 6408 days 1230.2
TCGA-EA-A3QD-01A 59 years, female, white, alive, 397 days 1205.3
TCGA-MA-AA43-01A 48 years, female, white, alive, 346 days 1201.8
TCGA-JX-A3Q8-01A 40 years, female, asian, alive, 1357 days 1192.1
TCGA-WL-A834-01A female, white, alive, 791 days 1190.0
TCGA-JW-A5VI-01A 45 years, female, american indian or alaska native, alive, 747 days 1178.2
TCGA-DG-A2KH-01A 25 years, female, alive, 34 days 1171.1
TCGA-EX-A69L-01A 41 years, female, asian, alive, 602 days 1164.7
TCGA-VS-A8Q9-01A 79 years, female, white, alive, 1630 days 1161.0
TCGA-MA-AA3Y-01A 48 years, female, white, alive, 542 days 1153.8
TCGA-MU-A8JM-01A 47 years, female, white, alive, 607 days 1147.2
TCGA-C5-A2M2-01A 56 years, female, white, dead, 1011 days 1147.0
TCGA-VS-AA62-01A 51 years, female, white, dead, 469 days 1144.2
TCGA-C5-A902-01A 35 years, female, black or african american, alive, 149 days 1135.7
TCGA-JW-A5VH-01A 53 years, female, american indian or alaska native, dead, 100 days 1129.3
TCGA-EA-A3HS-01A 35 years, female, white, alive, 959 days 1126.9
TCGA-VS-A952-01A 66 years, female, white, alive, 1778 days 1125.6
TCGA-LP-A4AU-01A 35 years, female, asian, alive, 343 days 1106.1
TCGA-VS-A958-01A 46 years, female, white, alive, 1525 days 1096.9
TCGA-EA-A5ZE-01A 54 years, female, asian, alive, 829 days 1094.7
TCGA-VS-A8QM-01A 47 years, female, dead, 951 days 1086.6
TCGA-EX-A3L1-01A 32 years, female, white, alive, 463 days 1061.3
TCGA-EX-A8YF-01A 44 years, female, white, alive, 473 days 1060.8
TCGA-VS-A8EL-01A 38 years, female, black or african american, alive, 1992 days 1060.6
TCGA-C5-A1BJ-01A 34 years, female, white, alive, 4385 days 1043.9
TCGA-UC-A7PF-01A 44 years, female, dead, 2859 days 1035.0
TCGA-C5-A1M5-01A 53 years, female, white, dead, 2052 days 1033.3
TCGA-Q1-A5R1-01A 32 years, female, white, alive, 474 days 1032.3
TCGA-DG-A2KK-01A 51 years, female, alive, 2496 days 1029.5
TCGA-C5-A1BK-01B 36 years, female, black or african american, alive, 5385 days 1027.1
TCGA-EK-A2RJ-01A 51 years, female, white, alive, 53 days 1025.4
TCGA-C5-A7UE-01A 45 years, female, white, alive, 4738 days 1024.9
TCGA-EK-A2RL-01A 33 years, female, black or african american, dead, 1453 days 1018.3
TCGA-EA-A5ZD-01A 40 years, female, asian, alive, 830 days 1010.2
TCGA-C5-A1BQ-01C 65 years, female, white, dead, 604 days 1004.7
TCGA-C5-A1MK-01A 79 years, female, white, dead, 74 days 1002.8
TCGA-Q1-A73Q-01A 46 years, female, white, alive, 284 days 1000.9
TCGA-VS-A9U7-01A 30 years, female, white, alive, 1472 days 989.0
TCGA-ZX-AA5X-01A 64 years, female, white, alive, 119 days 988.9
TCGA-C5-A7X5-01A 72 years, female, black or african american, dead, 414 days 985.0
TCGA-C5-A1MI-01A 50 years, female, white, dead, 1083 days 981.0
TCGA-EA-A3HR-01A 57 years, female, white, alive, 940 days 974.9
TCGA-VS-A9V0-01A 58 years, female, alive, 573 days 956.2
TCGA-ZJ-AAX4-01A 85 years, female, white, alive, 21 days 949.3
TCGA-C5-A2LZ-01A 65 years, female, white, dead, 3046 days 948.6
TCGA-EK-A2PK-01A 43 years, female, white, alive, 12 days 942.3
TCGA-EA-A5O9-01A 39 years, female, white, alive, 788 days 941.6
TCGA-EK-A3GK-01A 33 years, female, white, alive, 15 days 933.8
TCGA-EK-A2RB-01A 48 years, female, white, alive, 9 days 925.3
TCGA-EK-A2PM-01A 81 years, female, white, alive, 18 days 919.1
TCGA-EK-A2RA-01A 74 years, female, alive, 1246 days 918.2
TCGA-C5-A905-01A 37 years, female, black or african american, alive, 4879 days 914.8
TCGA-EA-A410-01A 51 years, female, white, alive, 803 days 906.3
TCGA-DS-A1OD-01A 49 years, female, white, alive, 3874 days 903.3
TCGA-VS-A9V5-01A 50 years, female, white, dead, 494 days 888.8
TCGA-EK-A2RE-01A 26 years, female, white, alive, 57 days 888.7
TCGA-DS-A5RQ-01A 80 years, female, white, alive, 512 days 884.4
TCGA-VS-A9U5-01A 57 years, female, white, alive, 1535 days 879.2
TCGA-DS-A1OA-01A 77 years, female, asian, dead, 879 days 877.6
TCGA-C5-A7UH-01A 55 years, female, white, alive, 3988 days 873.4
TCGA-C5-A1M8-01A 43 years, female, white, alive, 919 days 871.9
TCGA-IR-A3L7-01A 37 years, female, white, alive, 4483 days 868.5
TCGA-VS-A8QF-01A 42 years, female, white, alive, 1800 days 867.9
TCGA-C5-A7X8-01A 35 years, female, white, alive, 83 days 865.8
TCGA-C5-A0TN-01A 21 years, female, black or african american, dead, 348 days 859.5
TCGA-JW-A5VG-01A 35 years, female, american indian or alaska native, alive, 834 days 857.9
TCGA-VS-A9UL-01A 79 years, female, white, dead, 442 days 854.0
TCGA-DS-A0VL-01A 25 years, female, white, alive, 1692 days 846.2
TCGA-UC-A7PD-01A 21 years, female, american indian or alaska native, dead, 355 days 846.0
TCGA-VS-A8EB-01A 41 years, female, white, dead, 305 days 837.7
TCGA-VS-A9UI-01A 76 years, female, white, dead, 1372 days 836.5
TCGA-DS-A0VK-01A 46 years, female, white, dead, 1118 days 835.9
TCGA-EA-A5FO-01A 59 years, female, white, alive, 815 days 834.7
TCGA-EK-A2H1-01A 20 years, female, white, alive, 799 days 834.7
TCGA-MU-A5YI-01A 60 years, female, black or african american, alive, 1053 days 833.6
TCGA-IR-A3LL-01A 60 years, female, white, alive, 1106 days 833.1
TCGA-C5-A1MH-01A 71 years, female, white, dead, 1186 days 828.8
TCGA-EX-A449-01A 42 years, female, white, alive, 447 days 825.7
TCGA-HM-A3JJ-01A 40 years, female, black or african american, dead, 659 days 822.0
TCGA-C5-A907-01A 47 years, female, white, alive, 448 days 812.9
TCGA-VS-A950-01A 42 years, female, alive, 1221 days 812.7
TCGA-C5-A1MP-01A 34 years, female, black or african american, alive, 109 days 811.6
TCGA-UC-A7PG-01A 44 years, female, white, dead, 370 days 810.5
TCGA-EK-A2R7-01A 45 years, female, white, alive, 27 days 806.0
TCGA-Q1-A73O-01A 37 years, female, alive, 428 days 803.9
TCGA-BI-A0VS-01A 48 years, female, white, alive, 1735 days 803.5
TCGA-C5-A901-01A 44 years, female, white, alive, 518 days 800.0
TCGA-EA-A411-01A 50 years, female, white, alive, 747 days 799.5
TCGA-C5-A1ML-01A 49 years, female, white, dead, 636 days 799.5
TCGA-LP-A4AW-01A 52 years, female, asian, alive, 27 days 796.3
TCGA-EK-A3GN-01A 47 years, female, white, alive, 27 days 794.5
TCGA-Q1-A6DV-01A 36 years, female, asian, alive, 491 days 794.5
TCGA-MA-AA3X-01A 50 years, female, black or african american, alive, 595 days 786.6
TCGA-JX-A3Q0-01A 63 years, female, black or african american, alive, 6375 days 782.4
TCGA-JW-A69B-01A 44 years, female, white, alive, 863 days 782.1
TCGA-FU-A23L-01A 60 years, female, white, alive, 725 days 777.4
TCGA-EK-A2PL-01A 36 years, female, white, alive, 13 days 770.8
TCGA-C5-A7CM-01A 35 years, female, white, alive, 619 days 770.7
TCGA-VS-A94W-01A 39 years, female, white, alive, 1243 days 770.1
TCGA-DS-A7WF-01A 41 years, female, dead, 492 days 767.9
TCGA-VS-A9UB-01A 54 years, female, alive, 911 days 766.3
TCGA-EA-A3HQ-01A 60 years, female, white, alive, 1136 days 766.1
TCGA-UC-A7PI-01A 45 years, female, white, alive, 2114 days 763.4
TCGA-VS-A9UH-01A 53 years, female, black or african american, alive, 1427 days 758.7
TCGA-EA-A4BA-01A 49 years, female, white, alive, 755 days 756.6
TCGA-PN-A8MA-01A 43 years, female, black or african american, alive, 90 days 754.9
TCGA-DS-A0VM-01A 51 years, female, white, alive, 2128 days 747.8
TCGA-EK-A2RC-01A 33 years, female, alive, 129 days 742.2
TCGA-VS-A94Z-01A 38 years, female, white, alive, 1015 days 741.4
TCGA-VS-A9UR-01A 53 years, female, white, alive, 793 days 741.0
TCGA-FU-A40J-01A 38 years, female, white, alive, 426 days 740.2
TCGA-LP-A4AX-01A 45 years, female, asian, alive, 380 days 739.6
TCGA-C5-A7CJ-01A 42 years, female, white, dead, 3097 days 738.0
TCGA-LP-A5U3-01A 40 years, female, asian, alive, 25 days 735.8
TCGA-IR-A3LI-01A 48 years, female, white, alive, 2493 days 735.7
TCGA-VS-A9UT-01A 72 years, female, asian, alive, 482 days 732.7
TCGA-C5-A8XI-01A 69 years, female, black or african american, alive, 254 days 730.6
TCGA-EA-A43B-01A 43 years, female, white, alive, 791 days 729.8
TCGA-IR-A3LF-01A 64 years, female, white, alive, 2949 days 727.5
TCGA-DR-A0ZM-01A 61 years, female, white, alive, 1791 days 725.8
TCGA-VS-A94X-01A 40 years, female, black or african american, dead, 506 days 725.1
TCGA-VS-A8EK-01A 65 years, female, white, dead, 829 days 722.0
TCGA-VS-A957-01A 64 years, female, white, alive, 1688 days 717.5
TCGA-VS-A8QC-01A 51 years, female, white, dead, 350 days 717.1
TCGA-EA-A97N-01A 38 years, female, white, alive, 11 days 715.4
TCGA-C5-A1M6-01A 55 years, female, white, dead, 955 days 713.1
TCGA-VS-A8Q8-01A 26 years, female, white, dead, 978 days 711.7
TCGA-FU-A3WB-01A 43 years, female, white, alive, 491 days 708.9
TCGA-C5-A8ZZ-01A 41 years, female, white, alive, 636 days 696.1
TCGA-VS-A9V1-01A 46 years, female, white, dead, 157 days 692.8
TCGA-C5-A7CO-01A 68 years, female, white, alive, 4482 days 691.5
TCGA-MU-A51Y-01A 27 years, female, white, alive, 854 days 683.1
TCGA-IR-A3LB-01A 53 years, female, white, dead, 2032 days 668.9
TCGA-BI-A0VR-01A 53 years, female, white, alive, 1505 days 668.8
TCGA-VS-A9UM-01A 39 years, female, black or african american, dead, 829 days 663.9
TCGA-FU-A57G-01A 49 years, female, white, alive, 1078 days 657.6
TCGA-DG-A2KM-01A 46 years, female, alive, 1946 days 656.2
TCGA-HG-A2PA-01A 38 years, female, white, dead, 773 days 650.8
TCGA-ZJ-A8QR-01A 38 years, female, native hawaiian or other pacific islander, dead, 582 days 646.8
TCGA-VS-A9UJ-01A 55 years, female, dead, 52 days 646.7
TCGA-VS-A8EG-01A 36 years, female, alive, 1386 days 645.6
TCGA-MY-A5BF-01A 68 years, female, white, alive, 634 days 645.0
TCGA-EX-A1H5-01A 58 years, female, black or african american, alive, 619 days 644.3
TCGA-ZJ-AAXA-01A 64 years, female, white, alive, 43 days 639.6
TCGA-VS-A9U6-01A 52 years, female, white, alive, 1320 days 638.3
TCGA-VS-A9UO-01A 43 years, female, white, alive, 1456 days 634.4
TCGA-Q1-A6DW-01A 44 years, female, white, alive, 534 days 632.6
TCGA-VS-A9V2-01A 29 years, female, white, alive, 555 days 632.5
TCGA-DS-A3LQ-01A 46 years, female, alive, 699 days 616.1
TCGA-MA-AA42-01A 75 years, female, white, alive, 259 days 614.4
TCGA-VS-A9UP-01A 43 years, female, alive, 1444 days 611.4
TCGA-FU-A3HY-01A 47 years, female, white, alive, 954 days 611.0
TCGA-VS-A9UZ-01A 61 years, female, white, alive, 2044 days 610.3
TCGA-VS-A9UY-01A 29 years, female, dead, 555 days 610.1
TCGA-VS-A8QA-01A 44 years, female, alive, 1099 days 598.3
TCGA-VS-A8EH-01A 56 years, female, alive, 986 days 595.7
TCGA-FU-A5XV-01A 32 years, female, white, alive, 321 days 595.2
TCGA-FU-A3TQ-01A 55 years, female, white, alive, 795 days 592.3
TCGA-C5-A1BE-01B 65 years, female, white, dead, 2094 days 589.2
TCGA-C5-A8XH-01A 39 years, female, white, dead, 1394 days 585.4
TCGA-VS-A94Y-01A 47 years, female, white, dead, 144 days 584.6
TCGA-C5-A2LS-01A 37 years, female, white, alive, 1345 days 582.7
TCGA-C5-A7XC-01A 26 years, female, white, alive, 1551 days 578.7
TCGA-JW-AAVH-01A 46 years, female, white, alive, 552 days 576.0
TCGA-IR-A3LH-01A 49 years, female, black or african american, alive, 2394 days 574.2
TCGA-Q1-A73R-01A 45 years, female, white, alive, 567 days 568.9
TCGA-VS-A9UQ-01A 32 years, female, alive, 1263 days 566.5
TCGA-JW-A5VJ-01A 56 years, female, american indian or alaska native, alive, 652 days 563.5
TCGA-EK-A2GZ-01A 64 years, female, black or african american, alive, 383 days 559.8
TCGA-C5-A1MN-01A 42 years, female, white, dead, 1245 days 556.6
TCGA-C5-A1BI-01B 31 years, female, white, alive, 1112 days 553.7
TCGA-Q1-A6DT-01A 55 years, female, white, dead, 275 days 549.8
TCGA-EA-A3HU-01A 43 years, female, white, alive, 1013 days 549.6
TCGA-C5-A8XJ-01A 74 years, female, white, alive, 4467 days 545.4
TCGA-C5-A7CL-01A 48 years, female, white, dead, 471 days 542.6
TCGA-HM-A4S6-01A 51 years, female, white, alive, 454 days 533.2
TCGA-EA-A1QS-01A 46 years, female, white, alive, 1203 days 528.0
TCGA-FU-A3TX-01A 78 years, female, alive, 45 days 527.9
TCGA-FU-A3YQ-01A 35 years, female, white, alive, 861 days 526.8
TCGA-EK-A2PI-01A 44 years, female, white, alive, 586 days 520.6
TCGA-C5-A7CK-01A 58 years, female, white, dead, 4086 days 520.5
TCGA-EA-A44S-01A 31 years, female, white, alive, 369 days 517.0
TCGA-IR-A3LC-01A 40 years, female, white, alive, 3935 days 515.2
TCGA-DS-A7WH-01A 34 years, female, white, alive, 533 days 511.7
TCGA-FU-A2QG-01A 29 years, female, white, alive, 579 days 509.8
TCGA-EA-A1QT-01A 47 years, female, white, alive, 1243 days 508.1
TCGA-EX-A1H6-01B 38 years, female, white, alive, 241 days 497.2
TCGA-JW-A5VL-01A 37 years, female, american indian or alaska native, alive, 474 days 497.0
TCGA-C5-A1BL-01A 32 years, female, white, alive, 5271 days 495.3
TCGA-EA-A556-01A 38 years, female, white, alive, 453 days 492.0
TCGA-EA-A3HT-01A 68 years, female, white, alive, 954 days 485.1
TCGA-VS-A959-01A 76 years, female, alive, 1561 days 484.6
TCGA-JX-A5QV-01A 37 years, female, white, alive, 636 days 482.9
TCGA-DS-A1O9-01A 75 years, female, white, dead, 266 days 476.9
TCGA-C5-A3HD-01B 51 years, female, white, alive, 1582 days 469.9
TCGA-EA-A439-01A 50 years, female, asian, alive, 965 days 465.6
TCGA-MA-AA3Z-01A 43 years, female, white, alive, 595 days 457.9
TCGA-EA-A3QE-01A 45 years, female, white, alive, 761 days 456.6
TCGA-C5-A7CH-01A 43 years, female, white, alive, 4694 days 454.6
TCGA-BI-A20A-01A 49 years, female, white, alive, 720 days 452.5
TCGA-VS-A9UU-01A 42 years, female, alive, 442 days 447.5
TCGA-4J-AA1J-01A 31 years, female, white, alive, 542 days 443.7
TCGA-C5-A8YR-01A 56 years, female, white, dead, 837 days 438.8
TCGA-EA-A6QX-01A 49 years, female, asian, alive, 730 days 433.6
TCGA-VS-A9V3-01A 62 years, female, white, alive, 540 days 412.7
TCGA-C5-A3HL-01A 76 years, female, white, alive, 621 days 402.5
TCGA-VS-A9UC-01A 32 years, female, alive, 825 days 401.6
TCGA-XS-A8TJ-01A 41 years, female, black or african american, alive, 890 days 400.4
TCGA-EK-A2RM-01A 40 years, female, white, alive, 50 days 397.7
TCGA-EK-A2IP-01A 28 years, female, white, alive, 202 days 389.7
TCGA-C5-A1BM-01A 78 years, female, black or african american, dead, 2520 days 357.2
TCGA-DG-A2KL-01A 53 years, female, alive, 1367 days 346.3
TCGA-DS-A1OC-01A 47 years, female, white, alive, 376 days 342.3
TCGA-EA-A5ZF-01A 56 years, female, asian, alive, 828 days 312.0
TCGA-EK-A2RN-01A 45 years, female, white, alive, 71 days 291.1
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CERVICAL CANCER - Protein expressioni

A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.

Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

 

Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more

Antibody HPA006124
 Staining
  High
  Medium
  Low
  Not detected
 Intensity
  Strong
  Moderate
  Weak
  Negative
 Quantity
  >75%
  75%-25%
  <25%
  None
 Location
  Nuclear
  Cytoplasmic/membranous
  Cytoplasmic/membranous,nuclear
  None
Click images for details

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.