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RPS12
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  • RPS12
PATHOLOGY STOMACH CANCER Show tissue menu
BREAST CANCER CARCINOID CERVICAL CANCER COLORECTAL CANCER ENDOMETRIAL CANCER GLIOMA HEAD AND NECK CANCER LIVER CANCER LUNG CANCER LYMPHOMA
MELANOMA OVARIAN CANCER PANCREATIC CANCER PROSTATE CANCER RENAL CANCER SKIN CANCER STOMACH CANCER TESTIS CANCER THYROID CANCER UROTHELIAL CANCER
ANTIBODIES
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Dictionary
Stomach cancer
Human pathology
Stomach cancer
STOMACH CANCER - Interactive survival scatter ploti

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisi

Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.

Read more
RPS12 is not prognostic in stomach cancer


Stage:


Survival analysis
Current cut offi

Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.

:
Best expression cut offi

Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .

When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.

Read more
: 921.81
Median expressioni

Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.

Read more
: N/A
Median follow up timei

Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.

: N/A
P scorei

Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.

N/A
5-year survival highi

5-year survival for patients with higher expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
5-year survival lowi

5-year survival for patients with lower expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
TCGA RNA samplesi

RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.

Average FPKM 806.0
Number of samples 354
Samples
Sample Description FPKM
TCGA-VQ-A91D-01A 70 years, male, white, stage:iiic, dead, 356 days 2599.9
TCGA-VQ-A8DU-01A 63 years, male, white, stage:iiia, dead, 166 days 2291.8
TCGA-HU-A4H5-01A 71 years, male, asian, stage:ib, alive, 724 days 2119.9
TCGA-HU-A4G2-01A 46 years, male, asian, stage:iib, alive, 739 days 2048.3
TCGA-VQ-A8E3-01A 79 years, male, white, stage:iia, dead, 661 days 2034.1
TCGA-BR-8289-01A 57 years, male, white, stage:iv, dead, 81 days 1744.3
TCGA-BR-8487-01A 64 years, female, white, stage:iia, alive, 34 days 1717.3
TCGA-D7-A74A-01A 61 years, female, white, stage:iiia, alive, 607 days 1703.8
TCGA-BR-8361-01A 71 years, female, white, stage:iiic, alive, 946 days 1679.2
TCGA-HU-A4GQ-01A 71 years, male, asian, stage:iiic, dead, 3 days 1669.9
TCGA-HU-A4GT-01A 71 years, female, asian, stage:iia, alive, 198 days 1646.2
TCGA-CD-8534-01A 41 years, male, asian, stage:ii, alive, 367 days 1643.7
TCGA-VQ-A94R-01A 63 years, male, white, dead, 1294 days 1640.1
TCGA-D7-A6EX-01A 72 years, female, white, stage:iiia, alive, 86 days 1630.5
TCGA-CG-5732-01A 66 years, male, stage:iv, dead, 2100 days 1618.6
TCGA-R5-A7ZF-01A 65 years, female, black or african american, stage:iv, dead, 259 days 1602.0
TCGA-CG-5723-01A 83 years, male, stage:ii, alive, 3196 days 1563.2
TCGA-IN-A6RS-01A 76 years, male, white, stage:ia, alive, 383 days 1546.8
TCGA-RD-A7BT-01A 66 years, male, native hawaiian or other pacific islander, stage:iv, dead, 262 days 1522.9
TCGA-3M-AB46-01A male, white, stage:ib, alive, 1765 days 1498.3
TCGA-B7-A5TJ-01A 74 years, male, white, stage:iib, alive, 335 days 1489.6
TCGA-VQ-A8PB-01A 65 years, female, white, stage:ii, dead, 1043 days 1421.0
TCGA-KB-A6F7-01A 54 years, female, stage:ib, alive, 1935 days 1419.4
TCGA-SW-A7EB-01A 45 years, male, white, stage:iiia, alive, 176 days 1408.1
TCGA-FP-A4BF-01A 68 years, male, white, stage:iiia, dead, 168 days 1395.7
TCGA-SW-A7EA-01A 61 years, female, white, stage:ib, alive, 579 days 1391.8
TCGA-BR-A4QL-01A 75 years, female, white, stage:iiib, dead, 491 days 1389.1
TCGA-BR-8081-01A 71 years, female, white, stage:iib, alive, 981 days 1374.0
TCGA-RD-A8N6-01A 78 years, female, white, stage:iiia, dead, 272 days 1372.5
TCGA-HU-8604-01A 82 years, female, asian, stage:iia, alive, 694 days 1316.1
TCGA-IN-7806-01A 50 years, male, white, stage:iib, alive, 1106 days 1309.5
TCGA-BR-A4J6-01A 69 years, female, white, stage:iia, alive, 20 days 1307.3
TCGA-VQ-A8PH-01A 62 years, male, white, stage:iiib, dead, 389 days 1289.8
TCGA-CG-4469-01A 70 years, male, stage:iv, dead, 215 days 1273.8
TCGA-HU-8249-01A 76 years, male, asian, stage:iiia, alive, 881 days 1270.6
TCGA-BR-8372-01A 63 years, male, white, stage:iiic, alive, 951 days 1267.2
TCGA-BR-8676-01A 59 years, male, white, stage:iiib, alive, 229 days 1266.4
TCGA-BR-7715-01A 65 years, male, white, stage:iia, alive, 1023 days 1261.4
TCGA-IN-A6RJ-01A 64 years, male, white, stage:ia, alive, 379 days 1242.2
TCGA-HU-A4GX-01A 70 years, female, asian, stage:iiic, alive, 616 days 1220.8
TCGA-D7-A6EY-01A 72 years, female, white, stage:iiib, dead, 348 days 1206.6
TCGA-HU-A4GJ-01A 60 years, female, asian, stage:iiic, alive, 650 days 1202.8
TCGA-BR-8286-01A 49 years, male, white, stage:ii, alive, 895 days 1195.8
TCGA-VQ-A8DV-01A 48 years, male, white, stage:ib, dead, 403 days 1194.6
TCGA-VQ-A8PE-01A 78 years, male, white, stage:iiib, dead, 675 days 1194.1
TCGA-CG-4437-01A 83 years, male, stage:ii, alive, 245 days 1188.8
TCGA-BR-8589-01A 56 years, male, white, stage:iiib, alive, 825 days 1179.2
TCGA-CG-5724-01A 59 years, male, stage:iv, dead, 366 days 1175.9
TCGA-BR-6566-01A 64 years, female, white, stage:iia, alive, 997 days 1171.0
TCGA-IN-A6RR-01A 84 years, male, white, dead, 205 days 1156.0
TCGA-CG-5726-01A 73 years, male, stage:ia, dead, 881 days 1155.3
TCGA-R5-A7O7-01A 52 years, male, white, stage:iv, alive, 1389 days 1152.0
TCGA-BR-8366-01A 80 years, female, white, stage:iia, alive, 29 days 1144.3
TCGA-BR-4279-01A 44 years, male, white, stage:ii, dead, 291 days 1138.6
TCGA-IN-7808-01A 59 years, male, white, dead, 105 days 1135.9
TCGA-D7-A4YX-01A 63 years, male, white, stage:iib, alive, 1108 days 1133.4
TCGA-BR-6453-01A 54 years, male, white, stage:iia, alive, 485 days 1112.8
TCGA-HF-A5NB-01A 75 years, female, stage:iiic, alive, 928 days 1110.6
TCGA-BR-8077-01A 58 years, female, white, stage:iiib, alive, 21 days 1107.2
TCGA-VQ-A91X-01A 74 years, male, white, stage:iiib, dead, 289 days 1107.2
TCGA-MX-A5UJ-01A 86 years, female, white, stage:iiia, alive, 600 days 1098.9
TCGA-CG-4306-01A 90 years, male, stage:iv, dead, 31 days 1088.8
TCGA-CG-4438-01A 56 years, male, stage:iv, alive, 1645 days 1075.3
TCGA-MX-A666-01A 61 years, male, white, stage:iia, alive, 427 days 1075.1
TCGA-VQ-A94T-01A 73 years, male, stage:iiib, dead, 342 days 1074.6
TCGA-IN-A6RL-01A 84 years, male, white, dead, 406 days 1071.3
TCGA-HU-A4G9-01A 67 years, female, asian, stage:ia, alive, 736 days 1067.9
TCGA-VQ-A8PJ-01A 53 years, male, stage:iv, dead, 82 days 1063.0
TCGA-VQ-A91S-01A 63 years, male, black or african american, stage:iiib, alive, 1000 days 1057.8
TCGA-IN-A7NR-01A 64 years, female, white, stage:iv, alive, 198 days 1057.8
TCGA-KB-A93H-01A 79 years, female, asian, stage:iib, alive, 1145 days 1055.0
TCGA-VQ-A91N-01A 59 years, female, stage:iv, dead, 570 days 1050.1
TCGA-CD-A48A-01A 57 years, male, asian, stage:iia, alive, 378 days 1048.8
TCGA-RD-A8N0-01A 53 years, female, white, stage:iiib, alive, 1236 days 1046.0
TCGA-D7-8575-01A 75 years, male, white, stage:iiia, dead, 554 days 1036.6
TCGA-IN-AB1X-01A 78 years, female, white, stage:iia, alive, 411 days 1033.1
TCGA-VQ-A8PU-01A 72 years, female, white, stage:iiia, dead, 832 days 1031.0
TCGA-R5-A7ZI-01A 44 years, female, white, stage:iv, alive, 2267 days 1027.0
TCGA-BR-4280-01A 78 years, female, white, stage:iii, dead, 201 days 1020.6
TCGA-BR-6563-01A 60 years, male, white, stage:iib, alive, 679 days 1017.7
TCGA-CG-4444-01A 76 years, male, stage:iiia, alive, 1431 days 1013.1
TCGA-CD-A4MG-01A 76 years, male, asian, stage:iia, dead, 200 days 1011.8
TCGA-VQ-A91Z-01A 67 years, female, white, stage:iiia, alive, 1690 days 1011.2
TCGA-BR-8381-01A 51 years, male, white, stage:iib, alive, 224 days 996.5
TCGA-RD-A7BS-01A 46 years, male, white, stage:iiia, dead, 336 days 996.3
TCGA-BR-A44T-01A 53 years, female, white, stage:iia, alive, 1038 days 984.1
TCGA-CD-A4MH-01A 86 years, female, asian, stage:iia, alive, 371 days 981.2
TCGA-D7-6522-01A 58 years, male, white, stage:ib, alive, 566 days 980.7
TCGA-D7-5577-01A 53 years, female, white, stage:iiia, dead, 782 days 978.8
TCGA-HU-8238-01A 56 years, male, asian, alive, 46 days 975.1
TCGA-B7-5818-01A 62 years, male, white, stage:ib, alive, 356 days 974.7
TCGA-D7-6519-01A 64 years, female, white, alive, 625 days 971.2
TCGA-VQ-A8DT-01A 43 years, male, stage:iiib, alive, 1484 days 971.0
TCGA-HU-A4G3-01A 54 years, male, asian, stage:iib, alive, 170 days 965.2
TCGA-BR-7717-01A 63 years, male, white, stage:iv, dead, 552 days 955.2
TCGA-HU-A4GD-01A 56 years, male, asian, stage:iib, alive, 692 days 953.4
TCGA-RD-A8MW-01A 72 years, male, white, stage:iiib, dead, 1153 days 949.7
TCGA-BR-7197-01A 69 years, male, white, stage:ii, alive, 280 days 946.9
TCGA-HU-A4H6-01A 72 years, female, asian, stage:iiia, alive, 644 days 940.9
TCGA-IN-A6RI-01A 45 years, male, white, stage:i, alive, 559 days 930.8
TCGA-HU-8244-01A 77 years, female, asian, stage:ia, alive, 742 days 930.6
TCGA-CG-5722-01A 67 years, female, stage:iv, alive, 30 days 922.3
TCGA-CD-8527-01A 72 years, female, asian, stage:ii, dead, 218 days 921.3
TCGA-CG-4466-01A 81 years, female, stage:ib, alive, 577 days 903.3
TCGA-VQ-A8PQ-01A 50 years, female, white, stage:iv, dead, 476 days 902.1
TCGA-BR-8059-01A 72 years, male, white, stage:iii, dead, 439 days 891.9
TCGA-D7-8574-01A 72 years, male, white, stage:iiia, alive, 523 days 890.8
TCGA-BR-8690-01A 54 years, female, white, stage:iiib, alive, 325 days 890.5
TCGA-BR-8297-01A 58 years, male, white, stage:iiic, alive, 225 days 884.7
TCGA-BR-8295-01A 60 years, female, white, stage:iib, dead, 67 days 884.5
TCGA-HJ-7597-01A 71 years, female, white, stage:ib, dead, 805 days 879.7
TCGA-F1-6177-01A 90 years, male, black or african american, stage:i, dead, 200 days 878.1
TCGA-VQ-A8P3-01A 72 years, male, white, stage:iiia, alive, 1132 days 876.0
TCGA-BR-4257-01A 79 years, female, white, dead, 294 days 873.7
TCGA-R5-A7ZR-01A 70 years, female, black or african american, stage:iii, dead, 185 days 871.6
TCGA-VQ-A925-01A 66 years, male, white, stage:iiia, dead, 138 days 870.8
TCGA-CG-5721-01A 58 years, male, stage:iv, alive, 183 days 869.2
TCGA-BR-8588-01A 55 years, female, white, stage:iib, alive, 389 days 867.8
TCGA-VQ-A94U-01A 71 years, male, white, stage:iib, alive, 819 days 865.5
TCGA-BR-A44U-01A 70 years, male, white, stage:iiib, dead, 422 days 857.0
TCGA-BR-8677-01A 74 years, female, white, stage:iiib, alive, 813 days 856.4
TCGA-B7-A5TK-01A 51 years, male, white, stage:iiia, alive, 288 days 854.3
TCGA-VQ-A8P2-01A 68 years, male, white, stage:iiia, alive, 1160 days 852.8
TCGA-RD-A7BW-01A 68 years, female, white, stage:ib, dead, 156 days 846.3
TCGA-D7-6815-01A 70 years, female, white, stage:iib, alive, 486 days 846.3
TCGA-IN-A7NU-01A 69 years, male, white, stage:iiib, alive, 356 days 843.7
TCGA-VQ-A8E2-01A 57 years, male, asian, stage:iiib, alive, 1319 days 833.3
TCGA-BR-8291-01A 61 years, male, white, stage:iib, dead, 607 days 832.1
TCGA-D7-A748-01A 41 years, female, white, stage:iv, dead, 132 days 830.3
TCGA-CD-5801-01A male, asian, stage:iiia, dead, 401 days 829.7
TCGA-IN-AB1V-01A 63 years, male, white, stage:ia, alive, 479 days 824.3
TCGA-BR-6455-01A 59 years, male, white, stage:iib, dead, 422 days 824.2
TCGA-VQ-A8PO-01A 74 years, male, white, stage:iib, dead, 282 days 824.1
TCGA-BR-8591-01A 79 years, male, white, stage:iiic, alive, 856 days 823.7
TCGA-D7-5578-01A 80 years, male, white, stage:iiia, alive, 385 days 823.5
TCGA-CD-5800-01A female, asian, stage:ii, alive, 400 days 818.4
TCGA-CG-5720-01A 71 years, male, stage:ib, dead, 30 days 815.5
TCGA-B7-A5TN-01A 60 years, male, white, stage:iib, alive, 287 days 812.4
TCGA-HU-A4GP-01A 62 years, female, asian, stage:iia, alive, 273 days 812.1
TCGA-ZA-A8F6-01A 71 years, male, white, stage:ib, alive, 525 days 811.2
TCGA-D7-6527-01A 62 years, male, white, stage:ii, dead, 312 days 803.2
TCGA-CD-A489-01A 58 years, male, asian, stage:iia, dead, 344 days 798.8
TCGA-RD-A7C1-01A 82 years, male, white, stage:ib, dead, 507 days 797.7
TCGA-HU-A4GC-01A 74 years, male, asian, stage:iiib, alive, 99 days 795.5
TCGA-BR-7707-01A 69 years, female, white, stage:ib, alive, 1090 days 793.6
TCGA-VQ-A8E7-01B 59 years, male, white, stage:iv, alive, 1138 days 793.0
TCGA-CG-4436-01A 57 years, male, stage:ib, alive, 243 days 791.5
TCGA-HU-A4HD-01A 73 years, male, asian, stage:iiia, alive, 1016 days 788.5
TCGA-HU-A4GY-01A 77 years, female, asian, stage:iiia, alive, 8 days 785.8
TCGA-B7-A5TI-01A 52 years, male, white, stage:iiic, alive, 595 days 782.3
TCGA-BR-8364-01A 42 years, female, white, stage:iiic, alive, 675 days 780.0
TCGA-HU-A4HB-01A 68 years, male, asian, stage:iib, dead, 477 days 776.2
TCGA-VQ-A924-01A 69 years, male, stage:ii, dead, 1686 days 775.3
TCGA-VQ-A8DZ-01A 70 years, male, black or african american, stage:iv, dead, 396 days 774.8
TCGA-CD-A48C-01A 80 years, female, asian, stage:iib, dead, 353 days 772.2
TCGA-FP-8210-01A 48 years, male, asian, stage:iiia, dead, 153 days 767.8
TCGA-BR-8371-01A 62 years, male, white, stage:iiib, dead, 359 days 762.7
TCGA-BR-4201-01A 66 years, female, white, dead, 940 days 759.0
TCGA-BR-6707-01A 75 years, male, white, stage:iia, alive, 605 days 757.9
TCGA-CD-5813-01A 60 years, male, asian, stage:ii, dead, 377 days 756.6
TCGA-BR-8058-01A 53 years, female, white, stage:iiib, alive, 1133 days 754.6
TCGA-CD-5799-01A 45 years, male, asian, stage:ii, alive, 396 days 750.3
TCGA-BR-A4J9-01A 55 years, male, white, stage:iia, alive, 14 days 749.8
TCGA-VQ-A922-01A 70 years, male, stage:iv, dead, 275 days 743.4
TCGA-BR-8365-01A 70 years, female, white, stage:iia, dead, 533 days 742.0
TCGA-HU-A4H0-01A 72 years, male, asian, stage:iiic, alive, 64 days 741.3
TCGA-BR-7957-01A 50 years, female, white, stage:iv, dead, 276 days 739.5
TCGA-VQ-A8PX-01A 51 years, male, stage:ia, alive, 1964 days 738.9
TCGA-VQ-A8P5-01A 67 years, male, white, stage:iia, dead, 235 days 738.3
TCGA-HU-8610-01A 75 years, male, asian, stage:ia, alive, 23 days 737.4
TCGA-R5-A7ZE-01B 66 years, female, white, stage:iiia, dead, 554 days 736.7
TCGA-D7-A6EV-01A 71 years, female, white, stage:iib, alive, 342 days 736.1
TCGA-F1-A72C-01A 68 years, male, asian, stage:iia, alive, 346 days 734.3
TCGA-MX-A5UG-01A 78 years, male, asian, stage:iiia, dead, 113 days 732.8
TCGA-HU-A4H3-01A 56 years, female, asian, stage:iiic, alive, 882 days 729.5
TCGA-MX-A663-01A 66 years, male, white, stage:iia, dead, 300 days 729.3
TCGA-BR-8369-01A 76 years, female, white, stage:iiib, alive, 427 days 726.0
TCGA-D7-A4YU-01A 73 years, male, white, stage:iiib, alive, 500 days 723.4
TCGA-VQ-A92D-01A 67 years, male, white, stage:ib, alive, 2032 days 722.1
TCGA-RD-A8N1-01A 70 years, male, white, stage:iiib, alive, 3519 days 714.7
TCGA-CG-4465-01A 69 years, female, stage:iv, dead, 274 days 714.3
TCGA-BR-4256-01A 80 years, male, white, dead, 284 days 707.8
TCGA-D7-8573-01A 57 years, male, white, stage:iia, alive, 593 days 706.5
TCGA-BR-A4J7-01A 49 years, male, asian, stage:iib, alive, 989 days 706.5
TCGA-HU-A4H8-01A 77 years, male, asian, stage:ib, alive, 428 days 702.5
TCGA-VQ-AA6F-01A 58 years, male, white, stage:iib, alive, 1646 days 698.7
TCGA-CD-8531-01A 66 years, female, asian, stage:iiia, alive, 383 days 695.1
TCGA-IN-8462-01A 80 years, male, white, stage:iib, alive, 572 days 694.0
TCGA-CD-8528-01A 43 years, female, asian, stage:iiia, alive, 375 days 691.2
TCGA-VQ-A928-01A 49 years, male, white, stage:iv, dead, 174 days 688.5
TCGA-VQ-A8PF-01A 77 years, male, stage:iiib, dead, 76 days 688.5
TCGA-VQ-AA6D-01A 52 years, female, stage:iiia, alive, 521 days 688.1
TCGA-RD-A8N5-01A 78 years, male, white, stage:iiia, dead, 1747 days 687.5
TCGA-BR-8686-01A 69 years, male, asian, stage:iiib, dead, 635 days 686.7
TCGA-CG-4460-01A 66 years, female, stage:iv, dead, 669 days 686.5
TCGA-BR-6803-01A 54 years, female, white, stage:iia, alive, 949 days 684.6
TCGA-CD-A487-01A 51 years, male, asian, stage:iib, alive, 374 days 683.9
TCGA-CD-5803-01A 78 years, female, asian, stage:ii, dead, 341 days 683.7
TCGA-HU-A4G8-01A 71 years, female, asian, stage:iib, alive, 690 days 683.4
TCGA-BR-4253-01A 80 years, female, white, stage:iiia, dead, 124 days 683.3
TCGA-CG-4301-01A 75 years, female, stage:iv, alive, 92 days 683.0
TCGA-BR-8284-01A 72 years, female, white, stage:iiic, dead, 245 days 682.5
TCGA-HU-8602-01A 58 years, female, asian, stage:iib, alive, 679 days 682.4
TCGA-BR-7959-01A 59 years, male, white, stage:iiia, alive, 1010 days 681.1
TCGA-BR-8592-01A 63 years, female, white, stage:iiib, dead, 191 days 679.7
TCGA-HU-A4H2-01A 58 years, female, asian, stage:iiib, alive, 394 days 679.5
TCGA-HU-8608-01A 70 years, male, asian, stage:iiib, alive, 641 days 675.7
TCGA-FP-A9TM-01A 77 years, male, white, alive, 189 days 674.8
TCGA-VQ-A91U-01A 78 years, male, asian, stage:iiia, dead, 52 days 670.6
TCGA-HU-A4GF-01A 69 years, male, asian, stage:iia, alive, 785 days 669.3
TCGA-HU-A4H4-01A 53 years, female, asian, stage:iib, alive, 725 days 669.1
TCGA-BR-8680-01A 45 years, male, asian, stage:iv, alive, 972 days 667.8
TCGA-VQ-A8P8-01A 72 years, female, black or african american, stage:iib, alive, 942 days 666.1
TCGA-BR-8368-01A 84 years, female, white, stage:ib, alive, 131 days 665.0
TCGA-VQ-AA68-01A 52 years, female, white, stage:iiic, alive, 1328 days 662.5
TCGA-BR-7958-01A 60 years, male, white, stage:iiib, alive, 899 days 659.2
TCGA-D7-6528-01A 70 years, female, white, stage:ib, alive, 463 days 657.0
TCGA-CG-4441-01A 83 years, male, stage:iiia, dead, 426 days 652.5
TCGA-BR-8380-01A 55 years, male, white, stage:iiic, dead, 21 days 651.0
TCGA-BR-8483-01A 59 years, male, white, stage:iiia, alive, 164 days 650.1
TCGA-BR-A4PF-01A 72 years, male, white, stage:iiib, alive, 35 days 648.0
TCGA-BR-6705-01A 68 years, female, white, stage:iiib, dead, 779 days 643.5
TCGA-IN-A6RN-01A 72 years, female, white, stage:iia, alive, 594 days 642.8
TCGA-BR-8484-01A 61 years, male, white, stage:iiia, dead, 766 days 639.9
TCGA-VQ-AA6J-01A 75 years, male, black or african american, stage:iiib, alive, 838 days 638.0
TCGA-BR-6852-01A 64 years, female, white, stage:iia, alive, 1367 days 637.8
TCGA-HU-A4GU-01A 74 years, male, asian, stage:iib, alive, 200 days 637.7
TCGA-VQ-A94O-01A 74 years, male, black or african american, stage:iiic, dead, 640 days 636.7
TCGA-VQ-A91E-01A 67 years, female, white, stage:iiib, alive, 664 days 636.2
TCGA-CD-5798-01A 83 years, male, asian, stage:ii, alive, 408 days 636.0
TCGA-BR-8687-01A 67 years, female, white, stage:iiic, dead, 250 days 632.8
TCGA-VQ-A8PC-01A 65 years, male, white, stage:iiia, dead, 1407 days 631.7
TCGA-VQ-A8PM-01A 56 years, male, white, stage:iv, dead, 57 days 631.0
TCGA-FP-A8CX-01A 60 years, male, white, stage:iiic, alive, 7 days 630.7
TCGA-CG-4477-01A 58 years, female, stage:ib, alive, 942 days 627.1
TCGA-VQ-A8PD-01A 69 years, male, white, stage:iiic, dead, 496 days 625.0
TCGA-BR-4187-01A 56 years, male, white, dead, 141 days 623.0
TCGA-BR-6709-01A 57 years, female, white, stage:iiib, dead, 370 days 614.9
TCGA-D7-A6F0-01A 79 years, female, white, stage:ib, alive, 678 days 610.7
TCGA-VQ-AA6A-01A 56 years, male, white, stage:iiic, alive, 1184 days 609.8
TCGA-CD-8525-01A 82 years, female, asian, stage:iiia, alive, 383 days 607.0
TCGA-BR-8485-01A 68 years, female, white, stage:iiic, alive, 280 days 603.7
TCGA-D7-A6F2-01A 62 years, male, white, stage:ib, alive, 476 days 600.8
TCGA-BR-8296-01A 58 years, female, white, stage:iiic, dead, 474 days 599.0
TCGA-CD-8530-01A 52 years, male, asian, stage:ii, alive, 377 days 596.0
TCGA-BR-6458-01A 57 years, female, white, stage:iib, dead, 588 days 594.9
TCGA-BR-8590-01A 62 years, male, white, stage:iiic, dead, 284 days 592.7
TCGA-RD-A8MV-01A 56 years, male, white, stage:iiib, alive, 3720 days 592.0
TCGA-BR-6801-01A 70 years, male, white, stage:iia, alive, 1223 days 588.0
TCGA-D7-A6EZ-01A 66 years, male, white, stage:iiia, dead, 618 days 586.2
TCGA-BR-6564-01A 46 years, female, white, stage:iiia, dead, 794 days 584.8
TCGA-CG-5734-01A 68 years, male, stage:iiia, dead, 243 days 584.0
TCGA-BR-A4CS-01A 77 years, male, white, stage:iiic, dead, 45 days 583.3
TCGA-D7-6822-01A 77 years, male, white, stage:ib, alive, 375 days 580.5
TCGA-VQ-AA6K-01A 60 years, male, white, stage:iiic, dead, 378 days 578.1
TCGA-BR-8060-01A 75 years, female, white, stage:iib, dead, 348 days 574.6
TCGA-VQ-A8PP-01A 76 years, male, stage:iv, dead, 712 days 572.4
TCGA-CG-4305-01A 69 years, male, stage:ii, alive, 485 days 570.7
TCGA-HF-7132-01A male, stage:ii, alive, 2351 days 569.3
TCGA-CD-A486-01A 68 years, male, asian, stage:iia, dead, 192 days 569.0
TCGA-HU-A4GH-01A 75 years, male, asian, stage:ia, alive, 358 days 566.9
TCGA-EQ-8122-01A 72 years, female, white, stage:iib, dead, 243 days 565.4
TCGA-D7-8572-01A 57 years, male, white, stage:iib, alive, 511 days 564.6
TCGA-VQ-AA64-01A 68 years, male, white, stage:iiib, dead, 560 days 563.6
TCGA-BR-6457-01A 69 years, male, white, stage:iia, alive, 416 days 563.4
TCGA-VQ-AA6G-01A 68 years, male, white, stage:iia, dead, 792 days 561.3
TCGA-VQ-A94P-01A 57 years, male, white, dead, 81 days 560.8
TCGA-CG-4440-01A 68 years, female, stage:iv, dead, 122 days 560.6
TCGA-VQ-A8E0-01A 68 years, male, black or african american, stage:iiia, dead, 562 days 560.0
TCGA-HF-7133-01A female, stage:iv, alive, 1918 days 558.9
TCGA-BR-A4J8-01A 71 years, female, white, stage:iiib, alive, 411 days 558.1
TCGA-VQ-A927-01A 81 years, male, white, stage:iiib, dead, 200 days 556.0
TCGA-BR-8678-01A 76 years, male, white, stage:ib, alive, 754 days 553.4
TCGA-BR-8682-01A 52 years, male, asian, stage:iib, alive, 991 days 549.4
TCGA-BR-8367-01A 56 years, male, white, stage:iiib, dead, 801 days 548.5
TCGA-BR-8373-01A 65 years, female, white, stage:iiia, alive, 450 days 548.2
TCGA-D7-6521-01A 65 years, male, white, alive, 564 days 547.5
TCGA-BR-8382-01A 67 years, female, white, stage:iiic, dead, 762 days 544.9
TCGA-RD-A8N9-01A 63 years, female, asian, stage:ii, alive, 1083 days 544.9
TCGA-BR-7851-01A 74 years, male, white, stage:iib, dead, 574 days 543.9
TCGA-CD-8533-01A 48 years, male, asian, stage:ii, alive, 468 days 540.4
TCGA-VQ-A91A-01A 67 years, male, white, stage:iiib, alive, 1200 days 539.8
TCGA-D7-6524-01A 53 years, male, white, stage:ii, alive, 543 days 539.8
TCGA-FP-8099-01A 79 years, male, white, stage:iia, alive, 519 days 538.2
TCGA-D7-A4Z0-01A 60 years, female, white, stage:iib, alive, 449 days 538.1
TCGA-R5-A805-01A 71 years, male, white, stage:iiib, dead, 281 days 537.5
TCGA-VQ-A91V-01A 58 years, male, stage:iiia, alive, 1297 days 537.0
TCGA-BR-A4J5-01A 56 years, male, asian, stage:iiia, alive, 862 days 535.8
TCGA-BR-A4IV-01A 47 years, male, asian, stage:iiib, dead, 869 days 533.4
TCGA-VQ-A8PK-01A 58 years, male, white, stage:iiib, dead, 543 days 533.4
TCGA-VQ-AA69-01A 35 years, male, white, stage:iiia, alive, 864 days 532.8
TCGA-F1-A448-01A 70 years, male, white, stage:iiib, alive, 647 days 532.6
TCGA-CG-5717-01A 58 years, male, stage:ii, dead, 212 days 527.5
TCGA-FP-7916-01A 78 years, male, asian, stage:iiic, dead, 428 days 526.1
TCGA-BR-8486-01A 90 years, female, white, stage:ia, alive, 615 days 525.7
TCGA-BR-A4J4-01A 39 years, male, asian, stage:iiib, alive, 16 days 525.6
TCGA-ZQ-A9CR-01A 79 years, female, white, stage:iiic, dead, 24 days 523.3
TCGA-D7-6525-01A 58 years, male, white, stage:iiia, dead, 406 days 521.8
TCGA-BR-6456-01A 74 years, female, white, stage:iib, dead, 526 days 505.1
TCGA-F1-6874-01A 79 years, male, white, stage:ib, alive, 440 days 504.9
TCGA-VQ-A923-01A 90 years, male, white, stage:iiia, dead, 61 days 496.2
TCGA-D7-6818-01A 53 years, male, white, stage:iiia, dead, 376 days 495.8
TCGA-IN-8663-01A 68 years, male, white, stage:iib, dead, 103 days 494.2
TCGA-FP-8209-01A 49 years, male, white, stage:ib, dead, 1811 days 492.7
TCGA-VQ-A91K-01A 69 years, male, white, stage:iiia, alive, 1862 days 491.8
TCGA-D7-A747-01A 57 years, male, white, stage:iib, dead, 255 days 491.0
TCGA-RD-A8NB-01A 80 years, female, white, stage:iiia, dead, 513 days 489.6
TCGA-BR-7196-01A 64 years, male, white, stage:iv, alive, 666 days 483.8
TCGA-CD-8535-01A 59 years, male, asian, stage:iiia, alive, 390 days 479.8
TCGA-CG-5725-01A 72 years, male, stage:ib, dead, 457 days 473.2
TCGA-BR-7723-01A 59 years, male, white, stage:iiib, dead, 874 days 473.2
TCGA-D7-6526-01A 67 years, female, white, stage:iiia, alive, 523 days 472.1
TCGA-CD-8524-01A 61 years, female, asian, stage:ii, alive, 388 days 468.0
TCGA-CD-8526-01A 73 years, female, asian, stage:iiia, alive, 381 days 463.7
TCGA-VQ-A91Y-01A 67 years, male, white, stage:iiic, dead, 296 days 463.5
TCGA-BR-8080-01A 72 years, female, white, stage:iiic, dead, 292 days 462.4
TCGA-BR-8384-01A 69 years, male, white, stage:iiic, alive, 113 days 455.5
TCGA-CG-5719-01A 54 years, female, stage:iv, alive, 31 days 455.4
TCGA-HF-7134-01A male, stage:ia, alive, 1588 days 455.1
TCGA-FP-7998-01A 77 years, male, white, stage:iiic, alive, 678 days 437.1
TCGA-BR-7901-01A 74 years, male, white, stage:iib, dead, 105 days 436.2
TCGA-BR-7704-01A 69 years, female, white, stage:ii, alive, 1072 days 435.5
TCGA-CD-8529-01A 65 years, male, asian, stage:iv, alive, 374 days 433.0
TCGA-BR-6802-01A 65 years, male, white, stage:iiia, alive, 940 days 425.5
TCGA-FP-8211-01A 62 years, male, white, stage:iib, alive, 413 days 424.4
TCGA-IN-A7NT-01A 73 years, female, white, stage:iib, alive, 323 days 423.8
TCGA-CG-4475-01A 76 years, male, stage:iib, alive, 699 days 422.4
TCGA-CD-8532-01A 52 years, male, asian, stage:ii, dead, 354 days 413.8
TCGA-D7-8579-01A 66 years, female, white, stage:iib, alive, 636 days 404.3
TCGA-RD-A8N2-01A 59 years, female, white, stage:ib, alive, 3540 days 403.5
TCGA-RD-A8N4-01A 58 years, female, white, stage:iiia, alive, 2171 days 396.2
TCGA-BR-6452-01A 78 years, female, white, stage:iia, alive, 1055 days 384.2
TCGA-BR-6565-01A 67 years, male, white, stage:iib, dead, 279 days 367.0
TCGA-BR-7722-01A 62 years, male, white, stage:iib, dead, 466 days 366.5
TCGA-D7-8570-01A 44 years, male, white, stage:iiib, alive, 752 days 364.2
TCGA-VQ-A91Q-01A 61 years, male, stage:iv, dead, 633 days 364.1
TCGA-BR-8683-01A 75 years, male, asian, stage:iiib, dead, 300 days 363.5
TCGA-BR-4267-01A 51 years, male, white, stage:ib, dead, 188 days 355.9
TCGA-F1-6875-01A 80 years, male, black or african american, stage:ia, dead, 2197 days 352.3
TCGA-BR-4191-01A 72 years, male, white, dead, 558 days 351.9
TCGA-D7-6520-01A 53 years, male, white, stage:iiia, alive, 573 days 340.8
TCGA-IP-7968-01A 74 years, male, white, stage:iiib, alive, 77 days 329.5
TCGA-D7-8578-01A 72 years, male, white, stage:ib, alive, 643 days 318.8
TCGA-CG-5718-01A 78 years, female, stage:ii, dead, 1095 days 317.0
TCGA-KB-A93G-01A 68 years, male, white, stage:ib, alive, 613 days 309.7
TCGA-FP-8631-01A 68 years, male, white, stage:iiia, alive, 17 days 309.2
TCGA-FP-7829-01A 69 years, male, white, stage:iib, alive, 594 days 299.3
TCGA-D7-8576-01A 54 years, female, white, stage:iiib, dead, 446 days 282.3
TCGA-FP-7735-01A 77 years, male, black or african american, stage:ib, dead, 106 days 281.5
TCGA-BR-7716-01A 62 years, female, white, stage:iib, alive, 1210 days 280.2
TCGA-CG-4443-01A 68 years, male, stage:ia, alive, 912 days 252.0
TCGA-BR-6710-01A 41 years, male, white, stage:ib, alive, 273 days 244.5
TCGA-KB-A93J-01A 78 years, male, white, stage:ii, alive, 1124 days 239.9
TCGA-CD-5804-01A 90 years, male, asian, alive, 368 days 203.6
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STOMACH CANCER - Protein expressioni

A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.

Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

 

Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more

Antibody HPA006124
 Staining
  High
  Medium
  Low
  Not detected
 Intensity
  Strong
  Moderate
  Weak
  Negative
 Quantity
  >75%
  75%-25%
  <25%
  None
 Location
  Nuclear
  Cytoplasmic/membranous
  Cytoplasmic/membranous,nuclear
  None
Click images for details

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.