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RPS15
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1112.3 nTPM
HPA:1112.3 nTPM
GTEx:1541.2 nTPM
FANTOM5:46.3 Scaled Tags Per Million
Pig:194.4 nTPM
Mouse:2114.3 nTPM
Allen mouse:9.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 1112.3
Sample id Sample description nTPM
Amygdala
nTPM: 1101.3
2695 Female, age 67, right hemisphere 1152.0
2514 Male, age 75, right hemisphere 1102.7
2517 Female, age 94, left hemisphere 1089.3
2814 Male, age 76, right hemisphere 1084.8
1987 Female, age 91, left hemisphere 1077.5
Basal amygdala
nTPM: 1078.4
2827 Female, age 67, right hemisphere 1156.2
2609 Male, age 75, right hemisphere 1104.8
2685 Female, age 94, left hemisphere 1071.1
2110 Male, age 80, left hemisphere 1066.9
2243 Female, age 91, right hemisphere 1038.7
1955 Male, age 76, both hemispheres 1032.8
Central amygdala
nTPM: 1100.8
2826 Female, age 94, left hemisphere 1253.9
2515 Male, age 75, right hemisphere 1118.8
1905 Male, age 76, both hemispheres 1055.6
2239 Male, age 80, left hemisphere 1050.7
2701 Female, age 91, right hemisphere 1024.8
Corticomedial amygdala
nTPM: 1051.9
2535 Female, age 67, right hemisphere 1107.5
2428 Male, age 75, right hemisphere 1071.6
2829 Male, age 80, left hemisphere 1060.4
2242 Female, age 91, right hemisphere 1034.4
2429 Female, age 94, left hemisphere 1028.3
2240 Male, age 76, both hemispheres 1009.4
Lateral amygdala
nTPM: 1112.3
2830 Female, age 67, right hemisphere 1220.7
2516 Male, age 75, right hemisphere 1154.5
2534 Female, age 94, left hemisphere 1146.9
2256 Male, age 80, left hemisphere 1074.9
2255 Female, age 91, right hemisphere 1051.3
1883 Male, age 76, both hemispheres 1025.2
Stria terminalis, bed nucleus
nTPM: 1025.8
1974 Female, age 91, both hemispheres 1073.6
2201 Male, age 74, unknown 1017.2
2486 Female, age 94, both hemispheres 986.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1541.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1541.2
Samples: 152

Max nTPM: 4000.7
Min nTPM: 642.6
Std nTPM: 612.5
Median nTPM: 1409.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 4000.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 3815.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 3616.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 3270.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 3245.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 3112.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2983.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2818.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2634.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2547.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 2496.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2486.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 2460.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 2459.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 2412.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 2401.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 2365.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 2315.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 2311.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 2270.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 2259.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2217.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 2160.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 2036.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 2004.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1996.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1924.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1919.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1914.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1903.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1898.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1876.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1873.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1825.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1780.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1777.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1776.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1772.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1765.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1758.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1723.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1706.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1692.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1684.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1667.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1638.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1618.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1602.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1600.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1593.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1591.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1562.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1553.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1532.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1523.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1516.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1504.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1498.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1493.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1484.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1479.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1478.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1472.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1468.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1464.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1462.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1455.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1450.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1449.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1445.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1442.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1439.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1436.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1433.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1425.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1423.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1395.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1376.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1375.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1373.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1367.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1354.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1346.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1341.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1328.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1327.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1316.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1311.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1310.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1302.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1289.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1286.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1286.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1272.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1272.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1269.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1263.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1247.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1244.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1239.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1229.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1228.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1204.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1199.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1184.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1178.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1173.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1173.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1164.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1160.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1159.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1152.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1148.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1147.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1147.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1143.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1137.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1107.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1100.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1094.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1088.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1075.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1061.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1060.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1053.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1053.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1047.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1046.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1044.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1042.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1012.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 996.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 985.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 973.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 970.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 966.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 939.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 928.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 926.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 911.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 907.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 901.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 873.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 866.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 843.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 831.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 823.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 822.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 795.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 789.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 769.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 642.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 46.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 46.3
FF:10151-102I7 76 years, female 46.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 194.4
Pig sample Sample description nTPM
Amygdala
nTPM: 194.4
Samples: 4

Max nTPM: 234.0
Min nTPM: 130.6
Sample A Female 234.0
Sample B Female 207.7
Sample C Male 205.4
Sample D Male 130.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2114.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 2114.4
Samples: 4

Max nTPM: 2248.9
Min nTPM: 1969.0
Sample A Male 1969.0
Sample B Male 2192.1
Sample C Female 2248.9
Sample D Female 2047.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 9.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 9.5
68321982 Antisense, RP_041207_01_B08, Mouse strain C57BL/6J (56 days, male) 9.6
75774687 Antisense, RP_060530_01_D12, Mouse strain C57BL/6J (56 days, male) 9.5

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