MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1079.2 nTPM
HPA:1079.2 nTPM
GTEx:1383.4 nTPM
FANTOM5:54.1 Scaled Tags Per Million
Pig:310.0 nTPM
Mouse:1260.1 nTPM
Allen mouse:5.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1079.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1067.0
2586 Male, age 75, left hemisphere 1152.3
2828 Female, age 72, unknown 1082.8
2666 Male, age 74, left hemisphere 1077.6
1870 Female, age 42, unknown 1069.2
2019 Male, age 18, unknown 1060.9
1833 Male, age 53, unknown 1050.6
1830 Male, age 51, unknown 1049.3
2411 Female, age 72, unknown 1048.6
1827 Male, age 72, unknown 1048.0
2219 Male, age 76, both hemispheres 1030.7
Dorsal raphe nucleus
nTPM: 1048.6
2750 Male, age 76, both hemispheres 1072.8
2298 Female, age 72, unknown 1062.6
2016 Female, age 72, unknown 1046.2
1828 Male, age 53, unknown 1034.2
2047 Male, age 72, unknown 1027.3
Inferior colliculus
nTPM: 1050.0
1890 Male, age 53, unknown 1062.3
2849 Male, age 72, unknown 1060.5
1848 Female, age 42, unknown 1041.8
2097 Female, age 72, unknown 1035.3
Median raphe nucleus
nTPM: 1049.8
2220 Male, age 76, midline 1049.8
Pedunculopontine tegmental nucleus
nTPM: 1066.5
2338 Male, age 61, both hemispheres 1089.4
2334 Male, age 80, both hemispheres 1085.0
1921 Female, age 85, both hemispheres 1025.0
Periaquaductal grey, anterior
nTPM: 1072.4
2502 Female, age 75, unknown 1103.6
1795 Male, age 51, unknown 1071.9
1947 Male, age 18, unknown 1041.5
Periaquaductal grey, dorsal
nTPM: 1037.1
1840 Male, age 53, unknown 1058.5
2850 Male, age 76, both hemispheres 1041.1
1831 Male, age 72, unknown 1031.6
2464 Female, age 72, unknown 1017.2
Periaquaductal grey, lateral
nTPM: 1030.9
2053 Male, age 18, unknown 1038.7
2140 Male, age 76, both hemispheres 1029.5
2272 Male, age 74, both hemispheres 1024.5
Pretectal area
nTPM: 1047.8
2007 Male, age 72, unknown 1084.0
1817 Female, age 42, unknown 1077.4
1816 Male, age 51, unknown 1067.3
1815 Male, age 53, unknown 1054.6
2316 Male, age 76, right hemisphere 1052.5
1944 Female, age 72, unknown 1051.9
2825 Male, age 18, unknown 1037.9
2224 Female, age 72, unknown 1037.2
2407 Male, age 75, both hemispheres 1027.3
2273 Male, age 74, both hemispheres 1021.2
2667 Female, age 75, unknown 1014.4
Red nucleus
nTPM: 1079.2
2503 Female, age 72, unknown 1153.0
2769 Male, age 72, unknown 1094.8
2227 Male, age 72, unknown 1090.1
2584 Male, age 75, left hemisphere 1085.4
2785 Male, age 18, unknown 1084.1
2725 Female, age 75, unknown 1081.5
2588 Male, age 74, left hemisphere 1079.1
1865 Male, age 51, unknown 1076.5
1904 Male, age 53, unknown 1060.1
1821 Female, age 72, unknown 1051.9
2823 Male, age 76, right hemisphere 1048.1
1954 Female, age 42, unknown 1046.2
Substantia nigra
nTPM: 1063.8
2699 Male, age 18, unknown 1102.2
1851 Male, age 51, unknown 1098.6
2665 Male, age 74, both hemispheres 1077.4
1916 Female, age 42, unknown 1067.9
2583 Male, age 75, right hemisphere 1067.9
1889 Female, age 72, unknown 1067.1
2590 Female, age 75, unknown 1065.1
2409 Female, age 72, unknown 1043.1
1941 Male, age 53, unknown 1040.9
2241 Male, age 72, unknown 1007.5
Superior colliculus
nTPM: 1068.6
2587 Male, age 74, left hemisphere 1112.6
1995 Male, age 72, unknown 1103.8
1796 Male, age 53, unknown 1092.8
1913 Female, age 42, unknown 1077.9
2668 Female, age 75, unknown 1068.5
2664 Male, age 75, both hemispheres 1066.9
2261 Male, age 18, unknown 1059.6
1839 Male, age 51, unknown 1045.2
2087 Female, age 72, unknown 1043.6
1895 Male, age 76, right hemisphere 1014.8
Ventral tegmental area
nTPM: 1064.3
1915 Female, age 42, unknown 1088.2
2223 Female, age 72, unknown 1073.9
2021 Male, age 53, unknown 1064.8
2410 Female, age 72, unknown 1061.3
2218 Male, age 76, both hemispheres 1049.2
1942 Male, age 51, unknown 1048.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1383.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1383.4
Samples: 139

Max nTPM: 4545.9
Min nTPM: 520.3
Std nTPM: 564.6
Median nTPM: 1259.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 4545.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 3021.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2904.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2899.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2859.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2654.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 2621.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2450.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2390.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2242.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 2176.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 54.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 54.1
FF:10158-103A5 76 years, female 54.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 310.0
Pig sample Sample description nTPM
Midbrain
nTPM: 292.4
Samples: 4

Max nTPM: 428.6
Min nTPM: 201.8
Sample A Female 428.6
Sample B Female 308.8
Sample C Male 230.3
Sample D Male 201.8
Periaqueductal gray
nTPM: 225.6
Samples: 3

Max nTPM: 252.2
Min nTPM: 205.0
Sample B Female 219.6
Sample C Male 252.2
Sample D Male 205.0
Substantia nigra
nTPM: 310.0
Samples: 4

Max nTPM: 397.6
Min nTPM: 261.8
Sample A Female 397.6
Sample B Female 312.3
Sample C Male 261.8
Sample D Male 268.3
Superior colliculi
nTPM: 306.3
Samples: 4

Max nTPM: 364.3
Min nTPM: 254.0
Sample A Female 364.3
Sample B Female 346.7
Sample C Male 254.0
Sample D Male 260.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1260.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 1260.1
Samples: 4

Max nTPM: 1442.1
Min nTPM: 1097.0
Sample A Male 1442.1
Sample B Male 1161.7
Sample C Female 1097.0
Sample D Female 1339.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.2
75774687 Antisense, RP_060530_01_D12, Mouse strain C57BL/6J (56 days, male) 6.9
68321982 Antisense, RP_041207_01_B08, Mouse strain C57BL/6J (56 days, male) 3.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.