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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:671.4 nTPM
HPA:671.4 nTPM
FANTOM5:498.3 Scaled Tags Per Million
Pig:58.7 nTPM
Mouse:379.3 nTPM
Allen mouse:2.9 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 671.4
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 652.1
2396 Male, age 61, right hemisphere 702.3
2497 Male, age 66, unknown 636.4
2032 Female, age 42, unknown 617.6
Centromedial thalamic nucleus
nTPM: 635.7
2401 Male, age 76, right hemisphere 668.5
2279 Female, age 85, left hemisphere 602.8
Habenula
nTPM: 655.1
1957 Male, age 80, both hemispheres 675.3
2276 Male, age 66, unknown 653.6
2203 Male, age 61, left hemisphere 652.4
2252 Male, age 62, unknown 639.1
Lateral geniculate body
nTPM: 657.3
2575 Female, age 94, right hemisphere 682.0
2106 Female, age 67, right hemisphere 677.4
2399 Male, age 61, left hemisphere 667.5
2841 Male, age 80, both hemispheres 664.1
2857 Male, age 74, right hemisphere 654.3
2035 Female, age 72, unknown 650.5
1953 Male, age 62, unknown 639.3
2659 Male, age 66, unknown 623.4
Lateral thalamic nuclei
nTPM: 659.7
2765 Female, age 67, both hemispheres 718.5
2573 Female, age 94, left hemisphere 679.8
1903 Male, age 76, left hemisphere 649.3
2661 Female, age 72, unknown 637.5
2577 Male, age 74, both hemispheres 613.6
Medial dorsal thalamic nucleus
nTPM: 661.9
2572 Female, age 94, right hemisphere 741.9
2402 Female, age 67, both hemispheres 693.5
1971 Male, age 61, right hemisphere 688.9
2498 Male, age 66, unknown 682.1
1859 Male, age 76, both hemispheres 660.3
2039 Female, age 72, unknown 655.5
2026 Male, age 62, unknown 655.2
2492 Male, age 75, right hemisphere 650.9
1810 Male, age 48, unknown 650.7
2576 Male, age 74, both hemispheres 643.7
2283 Male, age 80, right hemisphere 641.5
1930 Female, age 42, unknown 631.9
2660 Female, age 72, unknown 608.0
Medial geniculate body
nTPM: 652.6
2650 Female, age 94, left hemisphere 685.6
2657 Male, age 74, right hemisphere 683.6
2049 Male, age 76, both hemispheres 676.9
2217 Female, age 72, unknown 651.0
2207 Male, age 80, right hemisphere 634.9
2571 Male, age 75, right hemisphere 619.4
1811 Female, age 42, unknown 617.2
Nucleus reuniens
nTPM: 654.4
2212 Female, age 67, left hemisphere 674.6
2205 Male, age 80, left hemisphere 661.6
2210 Female, age 85, left hemisphere 626.9
Nucleus rhomboideus
nTPM: 644.4
2213 Female, age 67, left hemisphere 667.1
2206 Male, age 80, both hemispheres 659.1
2280 Female, age 85, left hemisphere 606.9
Posterior thalamic nucleus
nTPM: 671.4
2649 Female, age 94, both hemispheres 748.2
2495 Female, age 67, right hemisphere 652.8
2655 Male, age 74, right hemisphere 642.5
2266 Male, age 76, right hemisphere 642.1
Pulvinar
nTPM: 658.0
2499 Male, age 66, unknown 694.6
1932 Male, age 80, right hemisphere 678.9
2398 Male, age 61, left hemisphere 670.9
2496 Female, age 67, right hemisphere 661.5
1972 Male, age 62, unknown 657.9
2724 Male, age 74, right hemisphere 652.0
2214 Male, age 76, right hemisphere 649.9
2582 Female, age 72, unknown 642.7
1929 Male, age 48, unknown 639.7
1899 Female, age 42, unknown 631.7
Subthalamic nucleus
nTPM: 670.6
2124 Male, age 62, unknown 708.9
2216 Male, age 48, unknown 688.2
2282 Male, age 61, both hemispheres 680.2
2056 Female, age 72, unknown 678.7
2275 Male, age 66, unknown 669.7
2779 Female, age 42, unknown 667.8
2406 Female, age 72, unknown 656.4
2658 Male, age 74, both hemispheres 615.1
Ventral posterolateral thalamic nucleus
nTPM: 638.4
2197 Male, age 80, both hemispheres 677.5
2397 Male, age 61, right hemisphere 670.8
2740 Male, age 76, right hemisphere 651.9
2570 Male, age 75, right hemisphere 635.6
2578 Male, age 74, both hemispheres 610.8
2581 Female, age 72, unknown 584.0
Ventral posteromedial thalamic nucleus
nTPM: 654.7
2202 Male, age 61, left hemisphere 687.2
2127 Male, age 76, right hemisphere 675.3
2281 Male, age 75, right hemisphere 661.0
2758 Male, age 80, both hemispheres 648.4
2653 Male, age 74, both hemispheres 601.5
Ventral thalamic nuclei
nTPM: 644.3
1860 Male, age 76, both hemispheres 671.7
2291 Female, age 72, unknown 660.9
2285 Male, age 62, unknown 654.7
1845 Male, age 48, unknown 651.5
2204 Male, age 80, both hemispheres 651.5
2580 Male, age 66, unknown 649.3
1912 Female, age 42, unknown 628.6
2858 Female, age 72, unknown 624.3
2652 Male, age 74, left hemisphere 605.9
Ventromedial nucleus
nTPM: 631.9
1822 Female, age 42, unknown 633.7
1982 Female, age 72, unknown 630.2
Zona incerta
nTPM: 630.0
2403 Male, age 62, unknown 654.6
2208 Male, age 80, right hemisphere 652.8
2215 Male, age 66, unknown 641.3
2822 Male, age 74, right hemisphere 613.3
2663 Female, age 72, unknown 587.9

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 498.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 498.3
FF:10154-103A1 76 years, female 498.3

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 58.7
Pig sample Sample description nTPM
Thalamus
nTPM: 58.7
Samples: 4

Max nTPM: 86.7
Min nTPM: 42.0
Sample A Female 52.7
Sample B Female 42.0
Sample C Male 53.4
Sample D Male 86.7

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 379.3
Mouse sample Sample description nTPM
Thalamus
nTPM: 379.3
Samples: 4

Max nTPM: 433.2
Min nTPM: 320.6
Sample A Male 433.2
Sample B Male 369.6
Sample C Female 393.7
Sample D Female 320.6

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 2.9
836 Antisense, RP_Baylor_102943, Mouse strain C57BL/6J (56 days, male) 5.4
837 Antisense, RP_Baylor_102943, Mouse strain C57BL/6J (56 days, male) 1.2
70795736 Antisense, RP_050712_01_H04, Mouse strain C57BL/6J (56 days, male) 0.3

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