MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:706.3 nTPM
HPA:706.3 nTPM
GTEx:708.1 nTPM
FANTOM5:655.7 Scaled Tags Per Million
Pig:83.6 nTPM
Mouse:357.8 nTPM
Allen mouse:4.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 706.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 647.6
2411 Female, age 72, unknown 693.1
1870 Female, age 42, unknown 683.7
2828 Female, age 72, unknown 678.0
1833 Male, age 53, unknown 658.3
1827 Male, age 72, unknown 657.5
1830 Male, age 51, unknown 644.5
2019 Male, age 18, unknown 635.7
2219 Male, age 76, both hemispheres 626.3
2586 Male, age 75, left hemisphere 602.0
2666 Male, age 74, left hemisphere 596.9
Dorsal raphe nucleus
nTPM: 706.3
2298 Female, age 72, unknown 738.8
2016 Female, age 72, unknown 704.6
2047 Male, age 72, unknown 699.7
2750 Male, age 76, both hemispheres 699.5
1828 Male, age 53, unknown 689.0
Inferior colliculus
nTPM: 670.3
2097 Female, age 72, unknown 694.4
1848 Female, age 42, unknown 692.3
2849 Male, age 72, unknown 649.0
1890 Male, age 53, unknown 645.5
Median raphe nucleus
nTPM: 686.8
2220 Male, age 76, midline 686.8
Pedunculopontine tegmental nucleus
nTPM: 671.2
2334 Male, age 80, both hemispheres 680.7
1921 Female, age 85, both hemispheres 666.8
2338 Male, age 61, both hemispheres 666.1
Periaquaductal grey, anterior
nTPM: 670.2
1947 Male, age 18, unknown 683.4
2502 Female, age 75, unknown 670.5
1795 Male, age 51, unknown 656.7
Periaquaductal grey, dorsal
nTPM: 673.0
1840 Male, age 53, unknown 690.0
2850 Male, age 76, both hemispheres 684.1
2464 Female, age 72, unknown 680.0
1831 Male, age 72, unknown 637.6
Periaquaductal grey, lateral
nTPM: 677.7
2140 Male, age 76, both hemispheres 688.9
2053 Male, age 18, unknown 673.4
2272 Male, age 74, both hemispheres 670.6
Pretectal area
nTPM: 659.1
2273 Male, age 74, both hemispheres 728.3
2224 Female, age 72, unknown 696.0
2667 Female, age 75, unknown 684.8
2825 Male, age 18, unknown 676.0
2316 Male, age 76, right hemisphere 671.3
1944 Female, age 72, unknown 641.7
1817 Female, age 42, unknown 640.9
1815 Male, age 53, unknown 639.8
1816 Male, age 51, unknown 634.1
2407 Male, age 75, both hemispheres 625.5
2007 Male, age 72, unknown 612.1
Red nucleus
nTPM: 663.9
1821 Female, age 72, unknown 712.6
2503 Female, age 72, unknown 693.0
1954 Female, age 42, unknown 688.7
2227 Male, age 72, unknown 679.1
2769 Male, age 72, unknown 679.0
1904 Male, age 53, unknown 677.8
2823 Male, age 76, right hemisphere 673.7
1865 Male, age 51, unknown 667.1
2725 Female, age 75, unknown 661.5
2785 Male, age 18, unknown 631.5
2588 Male, age 74, left hemisphere 613.1
2584 Male, age 75, left hemisphere 589.2
Substantia nigra
nTPM: 672.1
2241 Male, age 72, unknown 724.6
1916 Female, age 42, unknown 716.6
1851 Male, age 51, unknown 706.0
2699 Male, age 18, unknown 700.3
2409 Female, age 72, unknown 667.6
1941 Male, age 53, unknown 665.8
2590 Female, age 75, unknown 657.9
1889 Female, age 72, unknown 655.6
2583 Male, age 75, right hemisphere 613.5
2665 Male, age 74, both hemispheres 613.0
Superior colliculus
nTPM: 650.3
2587 Male, age 74, left hemisphere 677.9
1796 Male, age 53, unknown 669.5
1995 Male, age 72, unknown 664.0
1913 Female, age 42, unknown 653.4
1839 Male, age 51, unknown 653.2
1895 Male, age 76, right hemisphere 651.8
2087 Female, age 72, unknown 643.5
2261 Male, age 18, unknown 635.3
2668 Female, age 75, unknown 631.9
2664 Male, age 75, both hemispheres 622.2
Ventral tegmental area
nTPM: 686.8
1915 Female, age 42, unknown 708.3
2410 Female, age 72, unknown 702.3
2223 Female, age 72, unknown 684.2
1942 Male, age 51, unknown 677.6
2218 Male, age 76, both hemispheres 675.7
2021 Male, age 53, unknown 672.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 708.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 708.1
Samples: 139

Max nTPM: 1522.3
Min nTPM: 355.2
Std nTPM: 190.0
Median nTPM: 664.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1522.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1287.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1191.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1161.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 1127.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1125.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1086.9
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 1057.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 1050.9
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 1039.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 1038.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 655.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 655.7
FF:10158-103A5 76 years, female 655.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 83.6
Pig sample Sample description nTPM
Midbrain
nTPM: 74.9
Samples: 4

Max nTPM: 137.7
Min nTPM: 40.0
Sample A Female 137.7
Sample B Female 78.5
Sample C Male 40.0
Sample D Male 43.5
Periaqueductal gray
nTPM: 59.4
Samples: 3

Max nTPM: 65.9
Min nTPM: 52.4
Sample B Female 65.9
Sample C Male 59.8
Sample D Male 52.4
Substantia nigra
nTPM: 83.6
Samples: 4

Max nTPM: 104.1
Min nTPM: 72.0
Sample A Female 104.1
Sample B Female 78.1
Sample C Male 72.0
Sample D Male 80.3
Superior colliculi
nTPM: 66.2
Samples: 4

Max nTPM: 90.2
Min nTPM: 52.0
Sample A Female 90.2
Sample B Female 65.6
Sample C Male 52.0
Sample D Male 56.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 357.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 357.8
Samples: 4

Max nTPM: 372.2
Min nTPM: 332.7
Sample A Male 372.2
Sample B Male 365.7
Sample C Female 332.7
Sample D Female 360.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.4
836 Antisense, RP_Baylor_102943, Mouse strain C57BL/6J (56 days, male) 8.1
837 Antisense, RP_Baylor_102943, Mouse strain C57BL/6J (56 days, male) 2.4
70795736 Antisense, RP_050712_01_H04, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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