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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:642.4 nTPM
HPA:642.4 nTPM
GTEx:459.1 nTPM
FANTOM5:376.8 Scaled Tags Per Million
Pig:34.3 nTPM
Mouse:279.9 nTPM
Allen mouse:2.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 642.4
Sample id Sample description nTPM
Amygdala
nTPM: 642.4
1987 Female, age 91, left hemisphere 656.6
2814 Male, age 76, right hemisphere 652.7
2514 Male, age 75, right hemisphere 652.6
2695 Female, age 67, right hemisphere 652.0
2517 Female, age 94, left hemisphere 598.0
Basal amygdala
nTPM: 591.8
2609 Male, age 75, right hemisphere 623.0
1955 Male, age 76, both hemispheres 618.4
2243 Female, age 91, right hemisphere 601.3
2110 Male, age 80, left hemisphere 600.1
2685 Female, age 94, left hemisphere 569.2
2827 Female, age 67, right hemisphere 538.7
Central amygdala
nTPM: 610.6
1905 Male, age 76, both hemispheres 655.2
2515 Male, age 75, right hemisphere 632.4
2701 Female, age 91, right hemisphere 595.6
2239 Male, age 80, left hemisphere 594.6
2826 Female, age 94, left hemisphere 575.1
Corticomedial amygdala
nTPM: 605.8
2428 Male, age 75, right hemisphere 647.5
2242 Female, age 91, right hemisphere 613.5
2829 Male, age 80, left hemisphere 611.7
2429 Female, age 94, left hemisphere 608.9
2240 Male, age 76, both hemispheres 605.3
2535 Female, age 67, right hemisphere 548.0
Lateral amygdala
nTPM: 596.2
1883 Male, age 76, both hemispheres 640.3
2516 Male, age 75, right hemisphere 620.5
2256 Male, age 80, left hemisphere 598.1
2255 Female, age 91, right hemisphere 588.2
2534 Female, age 94, left hemisphere 581.6
2830 Female, age 67, right hemisphere 548.1
Stria terminalis, bed nucleus
nTPM: 598.6
2201 Male, age 74, unknown 607.5
1974 Female, age 91, both hemispheres 601.4
2486 Female, age 94, both hemispheres 586.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 459.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 459.1
Samples: 152

Max nTPM: 1019.5
Min nTPM: 215.1
Std nTPM: 134.1
Median nTPM: 431.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1019.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 890.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 854.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 819.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 815.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 777.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 766.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 738.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 713.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 687.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 661.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 661.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 658.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 652.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 651.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 644.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 622.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 620.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 620.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 615.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 612.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 596.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 582.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 573.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 571.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 570.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 561.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 560.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 553.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 550.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 550.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 549.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 544.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 542.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 537.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 531.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 531.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 512.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 512.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 508.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 504.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 501.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 501.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 499.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 493.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 492.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 487.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 485.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 483.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 482.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 479.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 478.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 474.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 472.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 462.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 461.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 461.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 461.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 460.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 460.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 457.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 453.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 453.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 452.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 450.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 448.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 444.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 443.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 443.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 441.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 440.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 440.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 439.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 439.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 435.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 431.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 430.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 430.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 427.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 426.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 425.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 423.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 423.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 421.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 419.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 411.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 410.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 410.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 410.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 409.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 409.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 406.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 404.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 403.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 403.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 398.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 398.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 396.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 396.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 392.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 391.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 390.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 385.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 385.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 384.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 383.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 383.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 381.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 378.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 377.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 373.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 371.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 371.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 370.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 370.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 368.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 365.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 365.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 364.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 364.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 363.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 363.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 359.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 355.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 348.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 343.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 342.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 339.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 338.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 338.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 338.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 337.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 336.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 329.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 328.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 326.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 324.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 321.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 310.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 310.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 305.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 303.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 296.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 295.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 288.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 285.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 282.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 272.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 269.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 268.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 263.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 215.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 376.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 376.8
FF:10151-102I7 76 years, female 376.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 34.3
Pig sample Sample description nTPM
Amygdala
nTPM: 34.3
Samples: 4

Max nTPM: 42.7
Min nTPM: 23.9
Sample A Female 36.8
Sample B Female 42.7
Sample C Male 33.8
Sample D Male 23.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 279.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 279.9
Samples: 4

Max nTPM: 288.7
Min nTPM: 265.0
Sample A Male 265.0
Sample B Male 279.8
Sample C Female 286.1
Sample D Female 288.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.2
836 Antisense, RP_Baylor_102943, Mouse strain C57BL/6J (56 days, male) 3.9
837 Antisense, RP_Baylor_102943, Mouse strain C57BL/6J (56 days, male) 0.4
70795736 Antisense, RP_050712_01_H04, Mouse strain C57BL/6J (56 days, male) 0.4

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