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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:711.6 nTPM
HPA:711.6 nTPM
FANTOM5:637.9 Scaled Tags Per Million
Pig:78.1 nTPM
Allen mouse:4.8 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 711.6
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 643.8
2301 Female, age 85, both hemispheres 655.0
2090 Male, age 80, both hemispheres 652.7
2188 Female, age 91, both hemispheres 647.9
1984 Male, age 76, both hemispheres 619.5
Dorsal cochlear nucleus
nTPM: 652.1
2187 Female, age 91, both hemispheres 663.7
2370 Male, age 61, both hemispheres 654.8
2058 Male, age 76, both hemispheres 654.2
2378 Male, age 80, both hemispheres 647.7
2802 Male, age 74, right hemisphere 640.0
Dorsal tegmental nucleus
nTPM: 665.5
2083 Male, age 80, both hemispheres 685.0
2326 Male, age 74, both hemispheres 672.2
1936 Male, age 76, left hemisphere 664.1
2358 Male, age 61, both hemispheres 640.6
Dorsolateral tegmental area
nTPM: 682.6
2751 Female, age 85, both hemispheres 711.8
2654 Male, age 80, both hemispheres 688.6
2360 Male, age 74, both hemispheres 681.9
2337 Male, age 61, both hemispheres 676.9
2141 Male, age 76, both hemispheres 654.0
Kolliker-Fuse nucleus
nTPM: 681.5
2315 Male, age 76, right hemisphere 748.7
2163 Male, age 80, both hemispheres 669.5
2793 Female, age 91, left hemisphere 626.3
Lateral lemniscal nuclei
nTPM: 634.9
2746 Female, age 85, left hemisphere 666.3
2169 Male, age 76, both hemispheres 645.1
2036 Male, age 80, both hemispheres 642.0
2320 Female, age 91, left hemisphere 612.6
2453 Male, age 74, right hemisphere 608.6
Lateral parabrachial nucleus
nTPM: 674.3
2139 Female, age 85, right hemisphere 698.1
2792 Male, age 76, both hemispheres 693.5
2013 Male, age 80, both hemispheres 673.4
2790 Male, age 61, both hemispheres 632.0
Lateral vestibular nucleus
nTPM: 662.2
2184 Male, age 76, both hemispheres 665.0
2311 Male, age 80, both hemispheres 659.4
Locus coeruleus
nTPM: 681.9
2014 Male, age 55, unknown 723.8
2123 Female, age 91, both hemispheres 697.5
2788 Male, age 74, unknown 697.3
2317 Female, age 72, unknown 688.3
1980 Male, age 76, both hemispheres 683.7
2162 Male, age 80, both hemispheres 650.9
2720 Male, age 74, both hemispheres 632.0
Medial olivary nucleus
nTPM: 711.6
2138 Female, age 91, both hemispheres 736.8
1943 Male, age 61, both hemispheres 728.6
1962 Male, age 76, both hemispheres 726.3
2851 Male, age 80, both hemispheres 654.6
Medial parabrachial nucleus
nTPM: 659.7
2170 Female, age 91, both hemispheres 688.4
2463 Female, age 85, right hemisphere 663.1
2156 Male, age 61, both hemispheres 649.3
2854 Male, age 80, both hemispheres 649.0
2786 Male, age 76, both hemispheres 648.7
Medial periolivary nuclei
nTPM: 653.0
2791 Male, age 74, right hemisphere 709.6
2063 Male, age 76, both hemispheres 669.3
2171 Female, age 85, both hemispheres 640.6
2081 Male, age 80, both hemispheres 638.0
2458 Female, age 91, both hemispheres 607.5
Motor facial nucleus
nTPM: 638.6
2365 Male, age 74, right hemisphere 680.2
2062 Male, age 76, both hemispheres 668.7
2126 Male, age 61, both hemispheres 640.7
2795 Female, age 91, both hemispheres 625.5
2697 Female, age 85, both hemispheres 622.9
2327 Male, age 80, both hemispheres 593.4
Motor trigeminal nucleus
nTPM: 629.9
2309 Male, age 76, both hemispheres 654.7
2335 Male, age 61, both hemispheres 640.0
2079 Male, age 80, both hemispheres 624.4
2560 Male, age 74, both hemispheres 621.0
2321 Female, age 91, both hemispheres 609.4
Nuclei of the trapezoid body
nTPM: 639.9
1983 Male, age 76, both hemispheres 670.8
2735 Female, age 85, both hemispheres 644.3
2159 Male, age 61, both hemispheres 631.6
2166 Male, age 80, both hemispheres 629.9
2368 Female, age 91, both hemispheres 623.2
Paramedian reticular nucleus
nTPM: 667.1
2057 Male, age 80, both hemispheres 687.2
2052 Male, age 76, both hemispheres 663.0
2050 Female, age 85, both hemispheres 662.7
2313 Male, age 61, both hemispheres 655.4
Pontine nuclei
nTPM: 648.7
1863 Male, age 55, unknown 672.7
2109 Female, age 72, unknown 667.1
2454 Male, age 74, left hemisphere 661.1
2727 Male, age 61, right hemisphere 649.9
1968 Male, age 76, left hemisphere 645.0
2115 Male, age 80, left hemisphere 640.0
2319 Female, age 91, both hemispheres 631.1
2787 Female, age 85, both hemispheres 622.7
Pontine raphe nucleus
nTPM: 659.7
2853 Male, age 76, midline 669.5
2122 Female, age 85, midline 650.0
Posteroventral cochlear nucleus
nTPM: 662.8
2341 Male, age 80, both hemispheres 677.2
2752 Female, age 85, both hemispheres 669.6
2135 Female, age 91, both hemispheres 656.9
2070 Male, age 76, both hemispheres 656.4
2371 Male, age 61, both hemispheres 653.7
Principal sensory trigeminal nucleus
nTPM: 642.0
2324 Male, age 76, both hemispheres 663.3
2158 Male, age 61, both hemispheres 643.1
2008 Male, age 80, left hemisphere 635.1
2367 Female, age 91, left hemisphere 626.6
Reticular pontine nucleus, caudal
nTPM: 632.4
2092 Male, age 76, both hemispheres 673.7
2559 Male, age 74, both hemispheres 642.5
2457 Female, age 91, both hemispheres 612.7
2332 Male, age 80, right hemisphere 600.6
Reticular pontine nucleus, oral
nTPM: 665.7
1939 Male, age 80, both hemispheres 691.3
2361 Male, age 74, both hemispheres 681.0
2167 Male, age 76, both hemispheres 668.8
2012 Female, age 85, both hemispheres 668.0
2366 Female, age 91, both hemispheres 619.3
Reticulotegmental nucleus
nTPM: 636.3
2325 Male, age 76, both hemispheres 653.0
2333 Male, age 80, both hemispheres 640.1
2322 Female, age 91, both hemispheres 633.4
2452 Male, age 74, both hemispheres 618.8
Spinal trigeminal nucleus, oral
nTPM: 641.3
2737 Female, age 85, both hemispheres 648.8
2164 Male, age 80, both hemispheres 638.4
1978 Male, age 76, both hemispheres 636.7
Subcoeruleus area
nTPM: 655.8
2369 Female, age 85, left hemisphere 707.9
1958 Male, age 80, both hemispheres 660.0
2451 Male, age 74, both hemispheres 641.3
2323 Female, age 91, left hemisphere 641.2
2089 Male, age 76, left hemisphere 628.7
Superior olive
nTPM: 648.0
2364 Male, age 74, right hemisphere 717.1
1875 Female, age 85, both hemispheres 654.1
2020 Male, age 76, both hemispheres 652.3
2329 Male, age 80, right hemisphere 615.5
2561 Female, age 91, both hemispheres 601.0
Superior vestibular nucleus
nTPM: 705.9
2383 Male, age 74, both hemispheres 753.2
2061 Male, age 76, both hemispheres 685.1
2015 Male, age 80, both hemispheres 679.3
Ventral periolivary nuclei
nTPM: 636.4
2023 Male, age 76, both hemispheres 671.5
2130 Female, age 85, both hemispheres 644.9
2165 Male, age 80, both hemispheres 634.2
2794 Female, age 91, left hemisphere 595.1
Ventrolateral tegmental area, A5 NE cell group
nTPM: 644.0
2359 Male, age 61, both hemispheres 677.1
2840 Female, age 85, both hemispheres 647.2
1959 Male, age 76, both hemispheres 646.1
2161 Male, age 80, both hemispheres 633.3
2449 Male, age 74, both hemispheres 632.9
2456 Female, age 91, both hemispheres 627.4

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 637.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 637.9
FF:10182-103D2 60 years, female 640.4
FF:10165-103B3 76 years, female 635.3
Pons
Scaled Tags Per Million: 471.2
FF:10033-101E6 18-54 years, mixed 471.2

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 78.1
Pig sample Sample description nTPM
Pons
nTPM: 78.1
Samples: 4

Max nTPM: 98.4
Min nTPM: 54.7
Sample A Female 54.7
Sample B Female 65.3
Sample C Male 94.0
Sample D Male 98.4

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 4.8
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 4.8
836 Antisense, RP_Baylor_102943, Mouse strain C57BL/6J (56 days, male) 8.9
837 Antisense, RP_Baylor_102943, Mouse strain C57BL/6J (56 days, male) 2.9
70795736 Antisense, RP_050712_01_H04, Mouse strain C57BL/6J (56 days, male) 0.8

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by the Knut & Alice Wallenberg Foundation.