MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:516.8 nTPM
HPA:516.8 nTPM
GTEx:725.4 nTPM
FANTOM5:342.6 Scaled Tags Per Million
Pig:703.0 nTPM
Mouse:986.6 nTPM
Allen mouse:8.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 516.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 460.3
1827 Male, age 72, unknown 529.0
2411 Female, age 72, unknown 504.0
1870 Female, age 42, unknown 500.6
2828 Female, age 72, unknown 495.2
2219 Male, age 76, both hemispheres 451.3
1830 Male, age 51, unknown 450.8
1833 Male, age 53, unknown 450.6
2666 Male, age 74, left hemisphere 432.7
2019 Male, age 18, unknown 417.8
2586 Male, age 75, left hemisphere 371.3
Dorsal raphe nucleus
nTPM: 441.8
2750 Male, age 76, both hemispheres 552.5
2298 Female, age 72, unknown 427.6
2047 Male, age 72, unknown 419.2
1828 Male, age 53, unknown 410.8
2016 Female, age 72, unknown 398.9
Inferior colliculus
nTPM: 414.4
2097 Female, age 72, unknown 433.3
1848 Female, age 42, unknown 422.9
1890 Male, age 53, unknown 404.1
2849 Male, age 72, unknown 397.1
Median raphe nucleus
nTPM: 516.8
2220 Male, age 76, midline 516.8
Pedunculopontine tegmental nucleus
nTPM: 468.9
2334 Male, age 80, both hemispheres 482.3
2338 Male, age 61, both hemispheres 466.9
1921 Female, age 85, both hemispheres 457.5
Periaquaductal grey, anterior
nTPM: 469.9
1795 Male, age 51, unknown 487.6
1947 Male, age 18, unknown 485.1
2502 Female, age 75, unknown 437.0
Periaquaductal grey, dorsal
nTPM: 418.0
1831 Male, age 72, unknown 454.1
2850 Male, age 76, both hemispheres 409.7
2464 Female, age 72, unknown 406.8
1840 Male, age 53, unknown 401.4
Periaquaductal grey, lateral
nTPM: 440.9
2053 Male, age 18, unknown 482.1
2272 Male, age 74, both hemispheres 448.0
2140 Male, age 76, both hemispheres 392.8
Pretectal area
nTPM: 470.4
1816 Male, age 51, unknown 529.1
1944 Female, age 72, unknown 514.3
1815 Male, age 53, unknown 497.8
2667 Female, age 75, unknown 469.5
2407 Male, age 75, both hemispheres 459.8
2273 Male, age 74, both hemispheres 458.2
1817 Female, age 42, unknown 458.1
2825 Male, age 18, unknown 457.0
2007 Male, age 72, unknown 449.0
2224 Female, age 72, unknown 447.4
2316 Male, age 76, right hemisphere 434.2
Red nucleus
nTPM: 461.1
2823 Male, age 76, right hemisphere 490.0
2725 Female, age 75, unknown 478.0
2584 Male, age 75, left hemisphere 475.7
1821 Female, age 72, unknown 469.4
2503 Female, age 72, unknown 468.5
1954 Female, age 42, unknown 467.0
1904 Male, age 53, unknown 466.1
1865 Male, age 51, unknown 460.8
2588 Male, age 74, left hemisphere 459.4
2769 Male, age 72, unknown 437.8
2227 Male, age 72, unknown 437.3
2785 Male, age 18, unknown 423.6
Substantia nigra
nTPM: 452.2
1889 Female, age 72, unknown 477.0
1916 Female, age 42, unknown 477.0
2241 Male, age 72, unknown 470.2
1851 Male, age 51, unknown 463.2
1941 Male, age 53, unknown 457.9
2590 Female, age 75, unknown 456.7
2409 Female, age 72, unknown 453.2
2583 Male, age 75, right hemisphere 448.4
2699 Male, age 18, unknown 435.6
2665 Male, age 74, both hemispheres 383.0
Superior colliculus
nTPM: 467.5
1913 Female, age 42, unknown 516.9
2261 Male, age 18, unknown 514.7
2587 Male, age 74, left hemisphere 510.7
1796 Male, age 53, unknown 502.4
2087 Female, age 72, unknown 496.5
2668 Female, age 75, unknown 466.8
1995 Male, age 72, unknown 441.2
1895 Male, age 76, right hemisphere 431.7
1839 Male, age 51, unknown 415.4
2664 Male, age 75, both hemispheres 378.4
Ventral tegmental area
nTPM: 482.2
2223 Female, age 72, unknown 510.9
2218 Male, age 76, both hemispheres 499.3
2410 Female, age 72, unknown 488.7
1915 Female, age 42, unknown 472.8
2021 Male, age 53, unknown 469.3
1942 Male, age 51, unknown 452.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 725.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 725.4
Samples: 139

Max nTPM: 1544.9
Min nTPM: 205.9
Std nTPM: 264.3
Median nTPM: 707.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 1544.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1470.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1413.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 1390.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 1388.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 1345.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1278.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1272.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 1234.7
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 1184.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 1177.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 342.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 342.6
FF:10158-103A5 76 years, female 342.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 703.0
Pig sample Sample description nTPM
Midbrain
nTPM: 703.1
Samples: 4

Max nTPM: 1121.4
Min nTPM: 454.0
Sample A Female 1121.4
Sample B Female 639.2
Sample C Male 597.6
Sample D Male 454.0
Periaqueductal gray
nTPM: 458.2
Samples: 3

Max nTPM: 507.0
Min nTPM: 429.2
Sample B Female 507.0
Sample C Male 438.5
Sample D Male 429.2
Substantia nigra
nTPM: 584.5
Samples: 4

Max nTPM: 716.8
Min nTPM: 424.0
Sample A Female 716.8
Sample B Female 424.0
Sample C Male 588.1
Sample D Male 609.2
Superior colliculi
nTPM: 497.5
Samples: 4

Max nTPM: 591.3
Min nTPM: 324.9
Sample A Female 591.3
Sample B Female 324.9
Sample C Male 523.5
Sample D Male 550.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 986.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 986.6
Samples: 4

Max nTPM: 1014.7
Min nTPM: 945.2
Sample A Male 999.4
Sample B Male 945.2
Sample C Female 987.1
Sample D Female 1014.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.7
71016595 Antisense, RP_050725_03_A05, Mouse strain C57BL/6J (56 days, male) 9.9
68632984 Antisense, RP_050125_02_B12, Mouse strain C57BL/6J (56 days, male) 7.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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