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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:304.7 nTPM
GTEx:304.7 nTPM
FANTOM5:60.2 Scaled Tags Per Million
Pig:114.9 nTPM
Mouse:453.2 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 304.7
GTEx sample id Sample description nTPM
Retina
Average nTPM: 304.7
Samples: 105

Max nTPM: 529.8
Min nTPM: 178.4
Std nTPM: 54.2
Median nTPM:
413_1 59 years, female 529.8
501_1 88 years, male 436.8
162_1 79 years, female 404.5
414_1 84 years, female 395.1
491_1 89 years, female 393.6
17_1 71 years, male 392.0
322_1 76 years, male 387.1
466_1 57 years, female 384.3
404_1 82 years, female 376.0
315_1 62 years, female 370.3
2_1 77 years, female 369.2
313_1 79 years, female 367.3
149_1 88 years, male 367.2
139_1 64 years, female 364.5
379_1 60 years, male 361.6
324_1 76 years, male 360.1
396_1 62 years, male 359.6
415_1 77 years, female 357.3
142_1 61 years, female 351.0
89_1 63 years, male 350.8
266_1 85 years, male 350.6
265_1 87 years, male 350.2
377_1 82 years, female 345.8
490_1 67 years, female 343.5
189_1 76 years, male 341.7
81_1 67 years, male 341.0
246_1 77 years, male 340.5
43_1 64 years, female 335.5
452_1 88 years, female 334.7
518_1 75 years, female 332.6
375_1 74 years, female 331.6
229_1 69 years, female 330.0
120_1 70 years, female 329.9
321_1 62 years, female 328.3
126_1 63 years, male 326.6
18_1 88 years, male 325.1
32_1 67 years, male 324.7
153_1 70 years, female 319.8
376_1 75 years, female 319.3
288_1 66 years, female 318.4
386_1 76 years, male 316.5
177_1 74 years, male 315.4
109_1 81 years, female 313.5
506_1 65 years, male 310.6
145_1 84 years, male 310.4
173_1 67 years, male 309.3
35_1 74 years, female 308.5
480_1 63 years, male 307.6
117_1 61 years, male 304.5
115_1 83 years, male 303.2
237_1 82 years, male 301.0
319_1 81 years, male 300.6
9_1 66 years, female 300.0
314_1 67 years, male 297.3
42_1 85 years, male 296.7
264_1 73 years, female 296.5
316_1 62 years, male 296.5
405_1 91 years, male 294.0
348_1 84 years, male 292.2
243_1 75 years, male 291.6
4_1 88 years, female 290.3
425_1 59 years, female 290.1
137_1 83 years, male 289.6
499_1 55 years, female 288.7
335_1 73 years, female 287.2
292_1 71 years, male 286.3
495_1 57 years, female 284.9
447_1 81 years, male 283.3
119_1 70 years, female 282.0
6_1 73 years, female 281.8
384_1 83 years, male 279.4
217_1 76 years, male 278.5
517_1 88 years, male 276.8
311_1 78 years, male 276.2
468_1 89 years, male 276.2
526_1 61 years, male 275.4
347_1 72 years, male 273.8
389_1 86 years, female 273.4
254_1 77 years, female 273.3
251_1 78 years, male 270.4
349_1 83 years, male 266.7
406_1 79 years, male 266.5
352_1 62 years, male 262.8
320_1 89 years, female 260.2
351_1 91 years, male 259.1
318_1 68 years, male 258.2
356_1 87 years, female 253.3
291_1 76 years, male 252.8
353_1 82 years, female 251.6
295_1 61 years, female 248.6
99_1 64 years, male 244.3
286_1 68 years, female 242.0
307_1 66 years, female 240.3
172_1 72 years, female 237.1
293_1 68 years, female 236.6
394_1 75 years, female 235.3
355_1 70 years, female 234.2
163_1 78 years, male 232.8
503_1 68 years, male 229.4
350_1 84 years, female 225.8
354_1 81 years, female 223.4
41_1 94 years, female 219.2
317_1 60 years, male 207.2
308_1 70 years, female 196.6
218_1 71 years, female 178.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 60.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 60.2
FF:10030-101E3 24-65 years, mixed 60.2

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 114.9
Pig sample Sample description nTPM
Retina
nTPM: 114.9
Samples: 4

Max nTPM: 129.2
Min nTPM: 103.0
Sample A Female 103.0
Sample B Female 129.2
Sample C Male 122.5
Sample D Male 104.9

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 453.2
Mouse sample Sample description nTPM
Retina
nTPM: 453.2
Samples: 4

Max nTPM: 486.9
Min nTPM: 437.6
Sample A Male 437.6
Sample B Male 442.0
Sample C Female 486.9
Sample D Female 446.4

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.