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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:552.4 nTPM
HPA:552.4 nTPM
FANTOM5:338.7 Scaled Tags Per Million
Pig:613.1 nTPM
Allen mouse:6.1 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 552.4
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 528.5
2188 Female, age 91, both hemispheres 605.6
2301 Female, age 85, both hemispheres 585.0
2090 Male, age 80, both hemispheres 509.4
1984 Male, age 76, both hemispheres 413.9
Dorsal cochlear nucleus
nTPM: 460.8
2187 Female, age 91, both hemispheres 568.6
2802 Male, age 74, right hemisphere 463.1
2378 Male, age 80, both hemispheres 438.6
2058 Male, age 76, both hemispheres 426.9
2370 Male, age 61, both hemispheres 406.9
Dorsal tegmental nucleus
nTPM: 459.5
2326 Male, age 74, both hemispheres 501.6
2083 Male, age 80, both hemispheres 487.1
1936 Male, age 76, left hemisphere 438.9
2358 Male, age 61, both hemispheres 410.5
Dorsolateral tegmental area
nTPM: 465.8
2751 Female, age 85, both hemispheres 544.2
2654 Male, age 80, both hemispheres 470.3
2337 Male, age 61, both hemispheres 441.3
2141 Male, age 76, both hemispheres 438.6
2360 Male, age 74, both hemispheres 434.6
Kolliker-Fuse nucleus
nTPM: 495.2
2793 Female, age 91, left hemisphere 622.1
2163 Male, age 80, both hemispheres 436.9
2315 Male, age 76, right hemisphere 426.4
Lateral lemniscal nuclei
nTPM: 501.3
2320 Female, age 91, left hemisphere 551.7
2746 Female, age 85, left hemisphere 504.8
2453 Male, age 74, right hemisphere 499.1
2036 Male, age 80, both hemispheres 475.5
2169 Male, age 76, both hemispheres 475.3
Lateral parabrachial nucleus
nTPM: 473.7
2792 Male, age 76, both hemispheres 560.8
2013 Male, age 80, both hemispheres 465.0
2139 Female, age 85, right hemisphere 454.4
2790 Male, age 61, both hemispheres 414.6
Lateral vestibular nucleus
nTPM: 449.7
2311 Male, age 80, both hemispheres 471.4
2184 Male, age 76, both hemispheres 428.1
Locus coeruleus
nTPM: 479.1
2014 Male, age 55, unknown 524.3
2720 Male, age 74, both hemispheres 508.1
2788 Male, age 74, unknown 489.5
2123 Female, age 91, both hemispheres 481.7
2162 Male, age 80, both hemispheres 464.6
1980 Male, age 76, both hemispheres 454.1
2317 Female, age 72, unknown 431.7
Medial olivary nucleus
nTPM: 550.3
1962 Male, age 76, both hemispheres 580.6
2138 Female, age 91, both hemispheres 570.5
1943 Male, age 61, both hemispheres 557.1
2851 Male, age 80, both hemispheres 492.8
Medial parabrachial nucleus
nTPM: 496.1
2170 Female, age 91, both hemispheres 598.6
2854 Male, age 80, both hemispheres 523.0
2463 Female, age 85, right hemisphere 488.9
2786 Male, age 76, both hemispheres 462.7
2156 Male, age 61, both hemispheres 407.5
Medial periolivary nuclei
nTPM: 508.3
2791 Male, age 74, right hemisphere 593.2
2458 Female, age 91, both hemispheres 530.4
2081 Male, age 80, both hemispheres 495.8
2063 Male, age 76, both hemispheres 473.9
2171 Female, age 85, both hemispheres 448.1
Motor facial nucleus
nTPM: 501.0
2365 Male, age 74, right hemisphere 589.2
2697 Female, age 85, both hemispheres 529.9
2126 Male, age 61, both hemispheres 509.3
2062 Male, age 76, both hemispheres 463.0
2327 Male, age 80, both hemispheres 460.7
2795 Female, age 91, both hemispheres 454.0
Motor trigeminal nucleus
nTPM: 484.9
2560 Male, age 74, both hemispheres 552.6
2321 Female, age 91, both hemispheres 529.8
2079 Male, age 80, both hemispheres 459.7
2309 Male, age 76, both hemispheres 450.0
2335 Male, age 61, both hemispheres 432.6
Nuclei of the trapezoid body
nTPM: 484.8
2159 Male, age 61, both hemispheres 513.4
2166 Male, age 80, both hemispheres 496.3
2368 Female, age 91, both hemispheres 493.3
1983 Male, age 76, both hemispheres 478.5
2735 Female, age 85, both hemispheres 442.3
Paramedian reticular nucleus
nTPM: 488.9
2050 Female, age 85, both hemispheres 520.0
2052 Male, age 76, both hemispheres 501.3
2313 Male, age 61, both hemispheres 468.4
2057 Male, age 80, both hemispheres 466.1
Pontine nuclei
nTPM: 524.9
2454 Male, age 74, left hemisphere 729.9
2319 Female, age 91, both hemispheres 587.0
2109 Female, age 72, unknown 516.7
1863 Male, age 55, unknown 501.3
1968 Male, age 76, left hemisphere 481.8
2727 Male, age 61, right hemisphere 475.9
2115 Male, age 80, left hemisphere 467.5
2787 Female, age 85, both hemispheres 438.9
Pontine raphe nucleus
nTPM: 473.2
2853 Male, age 76, midline 482.9
2122 Female, age 85, midline 463.6
Posteroventral cochlear nucleus
nTPM: 501.3
2135 Female, age 91, both hemispheres 642.7
2341 Male, age 80, both hemispheres 526.2
2070 Male, age 76, both hemispheres 469.4
2752 Female, age 85, both hemispheres 451.5
2371 Male, age 61, both hemispheres 416.8
Principal sensory trigeminal nucleus
nTPM: 489.2
2367 Female, age 91, left hemisphere 595.6
2158 Male, age 61, both hemispheres 468.9
2008 Male, age 80, left hemisphere 465.6
2324 Male, age 76, both hemispheres 426.7
Reticular pontine nucleus, caudal
nTPM: 528.1
2559 Male, age 74, both hemispheres 610.9
2457 Female, age 91, both hemispheres 556.1
2092 Male, age 76, both hemispheres 490.5
2332 Male, age 80, right hemisphere 454.8
Reticular pontine nucleus, oral
nTPM: 552.4
2361 Male, age 74, both hemispheres 686.2
2366 Female, age 91, both hemispheres 591.5
2012 Female, age 85, both hemispheres 499.6
1939 Male, age 80, both hemispheres 496.2
2167 Male, age 76, both hemispheres 488.3
Reticulotegmental nucleus
nTPM: 467.7
2322 Female, age 91, both hemispheres 505.1
2452 Male, age 74, both hemispheres 476.1
2333 Male, age 80, both hemispheres 448.5
2325 Male, age 76, both hemispheres 441.1
Spinal trigeminal nucleus, oral
nTPM: 440.6
1978 Male, age 76, both hemispheres 454.3
2164 Male, age 80, both hemispheres 443.7
2737 Female, age 85, both hemispheres 423.8
Subcoeruleus area
nTPM: 478.5
2369 Female, age 85, left hemisphere 564.5
1958 Male, age 80, both hemispheres 483.6
2089 Male, age 76, left hemisphere 464.4
2323 Female, age 91, left hemisphere 456.0
2451 Male, age 74, both hemispheres 423.8
Superior olive
nTPM: 523.1
2364 Male, age 74, right hemisphere 600.1
2020 Male, age 76, both hemispheres 521.1
2561 Female, age 91, both hemispheres 505.4
2329 Male, age 80, right hemisphere 499.4
1875 Female, age 85, both hemispheres 489.5
Superior vestibular nucleus
nTPM: 469.0
2383 Male, age 74, both hemispheres 507.6
2015 Male, age 80, both hemispheres 457.7
2061 Male, age 76, both hemispheres 441.8
Ventral periolivary nuclei
nTPM: 486.2
2023 Male, age 76, both hemispheres 528.3
2165 Male, age 80, both hemispheres 480.0
2130 Female, age 85, both hemispheres 469.2
2794 Female, age 91, left hemisphere 467.4
Ventrolateral tegmental area, A5 NE cell group
nTPM: 498.6
2449 Male, age 74, both hemispheres 545.1
2840 Female, age 85, both hemispheres 527.6
2456 Female, age 91, both hemispheres 497.5
1959 Male, age 76, both hemispheres 489.9
2161 Male, age 80, both hemispheres 471.8
2359 Male, age 61, both hemispheres 459.8

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 338.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 245.9
FF:10182-103D2 60 years, female 256.6
FF:10165-103B3 76 years, female 235.1
Pons
Scaled Tags Per Million: 338.7
FF:10033-101E6 18-54 years, mixed 338.7

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 613.1
Pig sample Sample description nTPM
Pons
nTPM: 613.1
Samples: 4

Max nTPM: 698.3
Min nTPM: 479.5
Sample A Female 698.3
Sample B Female 479.5
Sample C Male 656.9
Sample D Male 617.5

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 6.1
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 6.1
71016595 Antisense, RP_050725_03_A05, Mouse strain C57BL/6J (56 days, male) 6.6
68632984 Antisense, RP_050125_02_B12, Mouse strain C57BL/6J (56 days, male) 5.7

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.