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RPS25
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:703.6 nTPM
HPA:703.6 nTPM
GTEx:696.8 nTPM
FANTOM5:644.1 Scaled Tags Per Million
Pig:152.2 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 703.6
Sample id Sample description nTPM
Amygdala
nTPM: 703.6
2695 Female, age 67, right hemisphere 730.2
2514 Male, age 75, right hemisphere 711.3
1987 Female, age 91, left hemisphere 698.4
2814 Male, age 76, right hemisphere 692.8
2517 Female, age 94, left hemisphere 685.3
Basal amygdala
nTPM: 678.3
2827 Female, age 67, right hemisphere 697.8
2609 Male, age 75, right hemisphere 688.1
2685 Female, age 94, left hemisphere 679.5
2110 Male, age 80, left hemisphere 677.6
1955 Male, age 76, both hemispheres 670.3
2243 Female, age 91, right hemisphere 656.5
Central amygdala
nTPM: 689.0
2826 Female, age 94, left hemisphere 736.8
2515 Male, age 75, right hemisphere 696.2
1905 Male, age 76, both hemispheres 680.3
2701 Female, age 91, right hemisphere 666.6
2239 Male, age 80, left hemisphere 664.9
Corticomedial amygdala
nTPM: 670.9
2428 Male, age 75, right hemisphere 677.7
2829 Male, age 80, left hemisphere 677.4
2535 Female, age 67, right hemisphere 670.2
2429 Female, age 94, left hemisphere 668.0
2242 Female, age 91, right hemisphere 666.8
2240 Male, age 76, both hemispheres 665.5
Lateral amygdala
nTPM: 693.8
2830 Female, age 67, right hemisphere 733.3
2516 Male, age 75, right hemisphere 726.6
2534 Female, age 94, left hemisphere 697.6
1883 Male, age 76, both hemispheres 674.7
2256 Male, age 80, left hemisphere 666.6
2255 Female, age 91, right hemisphere 664.0
Stria terminalis, bed nucleus
nTPM: 665.1
1974 Female, age 91, both hemispheres 687.0
2201 Male, age 74, unknown 658.5
2486 Female, age 94, both hemispheres 649.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 696.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 696.8
Samples: 152

Max nTPM: 1988.8
Min nTPM: 356.4
Std nTPM: 264.5
Median nTPM: 630.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1988.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1784.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1685.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1497.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1466.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1410.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1211.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1190.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1168.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1148.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1133.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1066.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1065.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1036.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1022.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 999.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 920.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 909.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 906.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 899.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 873.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 862.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 861.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 858.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 857.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 849.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 849.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 839.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 827.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 824.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 823.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 821.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 818.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 816.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 806.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 803.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 803.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 801.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 800.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 783.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 778.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 775.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 767.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 765.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 762.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 761.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 757.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 745.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 732.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 732.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 731.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 726.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 713.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 706.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 699.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 698.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 698.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 696.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 690.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 688.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 684.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 679.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 677.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 675.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 673.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 667.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 664.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 657.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 657.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 654.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 651.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 648.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 644.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 633.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 632.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 632.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 628.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 621.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 618.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 618.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 616.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 616.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 612.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 611.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 610.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 608.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 604.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 603.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 600.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 596.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 594.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 594.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 594.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 593.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 593.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 592.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 584.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 582.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 575.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 575.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 574.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 572.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 571.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 570.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 560.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 560.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 555.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 554.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 552.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 542.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 541.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 537.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 536.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 533.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 532.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 523.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 521.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 518.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 512.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 509.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 507.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 506.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 502.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 499.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 493.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 492.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 490.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 483.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 477.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 477.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 476.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 476.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 474.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 470.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 463.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 453.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 453.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 443.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 441.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 438.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 433.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 427.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 422.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 422.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 412.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 409.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 408.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 403.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 376.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 366.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 363.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 356.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 644.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 644.1
FF:10151-102I7 76 years, female 644.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 152.2
Pig sample Sample description nTPM
Amygdala
nTPM: 152.2
Samples: 4

Max nTPM: 194.5
Min nTPM: 84.7
Sample A Female 194.5
Sample B Female 184.6
Sample C Male 145.1
Sample D Male 84.7

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