We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
RPS25
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • RPS25
BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:460.2 nTPM
GTEx:460.2 nTPM
FANTOM5:630.5 Scaled Tags Per Million
Pig:82.5 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 460.2
GTEx sample id Sample description nTPM
Retina
Average nTPM: 460.2
Samples: 105

Max nTPM: 658.0
Min nTPM: 314.8
Std nTPM: 70.2
Median nTPM:
246_1 77 years, male 658.0
384_1 83 years, male 623.3
379_1 60 years, male 620.9
389_1 86 years, female 603.9
375_1 74 years, female 601.1
495_1 57 years, female 585.5
377_1 82 years, female 584.4
452_1 88 years, female 578.3
237_1 82 years, male 559.5
307_1 66 years, female 559.5
396_1 62 years, male 554.7
447_1 81 years, male 554.1
17_1 71 years, male 551.2
376_1 75 years, female 542.3
265_1 87 years, male 541.9
35_1 74 years, female 541.1
386_1 76 years, male 540.3
153_1 70 years, female 538.8
2_1 77 years, female 536.1
4_1 88 years, female 534.1
322_1 76 years, male 530.2
189_1 76 years, male 524.2
120_1 70 years, female 521.9
139_1 64 years, female 521.9
394_1 75 years, female 510.9
145_1 84 years, male 505.2
229_1 69 years, female 504.6
355_1 70 years, female 502.9
518_1 75 years, female 499.7
526_1 61 years, male 499.3
254_1 77 years, female 497.0
308_1 70 years, female 495.4
315_1 62 years, female 494.0
321_1 62 years, female 493.6
347_1 72 years, male 486.1
501_1 88 years, male 477.9
137_1 83 years, male 477.1
468_1 89 years, male 469.1
348_1 84 years, male 467.9
217_1 76 years, male 467.4
162_1 79 years, female 465.1
311_1 78 years, male 465.0
126_1 63 years, male 462.9
314_1 67 years, male 462.6
499_1 55 years, female 459.6
142_1 61 years, female 459.5
119_1 70 years, female 458.3
351_1 91 years, male 455.2
41_1 94 years, female 453.9
320_1 89 years, female 452.7
404_1 82 years, female 448.1
313_1 79 years, female 448.0
264_1 73 years, female 446.8
173_1 67 years, male 445.7
354_1 81 years, female 443.9
352_1 62 years, male 442.6
6_1 73 years, female 441.6
266_1 85 years, male 441.5
117_1 61 years, male 441.1
81_1 67 years, male 441.0
42_1 85 years, male 440.9
18_1 88 years, male 439.2
109_1 81 years, female 438.9
218_1 71 years, female 438.3
353_1 82 years, female 438.3
491_1 89 years, female 437.1
89_1 63 years, male 436.9
414_1 84 years, female 434.6
466_1 57 years, female 434.6
291_1 76 years, male 433.6
349_1 83 years, male 428.8
251_1 78 years, male 426.7
295_1 61 years, female 419.5
425_1 59 years, female 418.0
288_1 66 years, female 417.2
115_1 83 years, male 415.6
163_1 78 years, male 415.2
405_1 91 years, male 414.8
415_1 77 years, female 414.7
172_1 72 years, female 409.1
503_1 68 years, male 407.7
286_1 68 years, female 402.7
335_1 73 years, female 399.0
517_1 88 years, male 396.2
506_1 65 years, male 393.3
406_1 79 years, male 392.8
177_1 74 years, male 392.4
319_1 81 years, male 389.1
99_1 64 years, male 388.8
32_1 67 years, male 388.3
149_1 88 years, male 385.5
490_1 67 years, female 379.2
317_1 60 years, male 375.9
480_1 63 years, male 373.9
356_1 87 years, female 371.2
318_1 68 years, male 366.4
292_1 71 years, male 364.2
324_1 76 years, male 360.4
43_1 64 years, female 358.5
293_1 68 years, female 358.3
413_1 59 years, female 357.4
316_1 62 years, male 356.3
243_1 75 years, male 355.8
350_1 84 years, female 355.7
9_1 66 years, female 314.8
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 630.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 630.5
FF:10030-101E3 24-65 years, mixed 630.5

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 82.5
Pig sample Sample description nTPM
Retina
nTPM: 82.5
Samples: 4

Max nTPM: 90.8
Min nTPM: 75.7
Sample A Female 79.6
Sample B Female 83.7
Sample C Male 90.8
Sample D Male 75.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.