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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:276.0 nTPM
HPA:276.0 nTPM
GTEx:301.3 nTPM
FANTOM5:652.9 Scaled Tags Per Million
Pig:50.5 nTPM
Mouse:19.8 nTPM
Allen mouse:1.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 276.0
Sample id Sample description nTPM
Amygdala
nTPM: 276.0
2695 Female, age 67, right hemisphere 338.8
2814 Male, age 76, right hemisphere 307.3
1987 Female, age 91, left hemisphere 256.1
2517 Female, age 94, left hemisphere 239.7
2514 Male, age 75, right hemisphere 238.1
Basal amygdala
nTPM: 224.6
1955 Male, age 76, both hemispheres 262.4
2110 Male, age 80, left hemisphere 241.1
2685 Female, age 94, left hemisphere 225.7
2243 Female, age 91, right hemisphere 209.2
2827 Female, age 67, right hemisphere 208.3
2609 Male, age 75, right hemisphere 200.9
Central amygdala
nTPM: 229.5
1905 Male, age 76, both hemispheres 262.4
2701 Female, age 91, right hemisphere 234.8
2239 Male, age 80, left hemisphere 227.3
2515 Male, age 75, right hemisphere 218.8
2826 Female, age 94, left hemisphere 204.3
Corticomedial amygdala
nTPM: 223.8
2240 Male, age 76, both hemispheres 260.2
2429 Female, age 94, left hemisphere 240.8
2242 Female, age 91, right hemisphere 216.0
2829 Male, age 80, left hemisphere 210.0
2535 Female, age 67, right hemisphere 208.5
2428 Male, age 75, right hemisphere 207.2
Lateral amygdala
nTPM: 238.3
1883 Male, age 76, both hemispheres 301.5
2256 Male, age 80, left hemisphere 257.3
2255 Female, age 91, right hemisphere 220.8
2534 Female, age 94, left hemisphere 219.6
2516 Male, age 75, right hemisphere 216.7
2830 Female, age 67, right hemisphere 213.8
Stria terminalis, bed nucleus
nTPM: 219.8
2201 Male, age 74, unknown 230.3
1974 Female, age 91, both hemispheres 220.2
2486 Female, age 94, both hemispheres 208.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 301.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 301.3
Samples: 152

Max nTPM: 3638.6
Min nTPM: 28.0
Std nTPM: 445.7
Median nTPM: 170.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 3638.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 2619.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 2389.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1389.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1363.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1080.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 964.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 944.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 885.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 867.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 795.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 741.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 734.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 670.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 668.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 576.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 575.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 568.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 560.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 512.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 510.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 490.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 455.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 445.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 427.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 419.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 409.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 408.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 408.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 408.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 407.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 360.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 351.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 337.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 326.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 318.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 314.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 311.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 309.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 300.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 300.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 298.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 292.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 290.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 283.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 279.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 268.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 258.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 248.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 246.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 231.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 224.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 223.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 220.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 211.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 207.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 205.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 203.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 202.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 198.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 198.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 195.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 192.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 191.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 191.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 189.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 188.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 187.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 186.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 183.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 181.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 181.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 181.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 178.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 175.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 173.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 167.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 164.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 163.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 158.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 157.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 155.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 154.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 153.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 151.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 144.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 141.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 139.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 138.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 133.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 133.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 132.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 130.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 129.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 127.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 123.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 121.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 118.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 118.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 117.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 113.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 113.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 112.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 110.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 109.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 107.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 107.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 107.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 104.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 103.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 102.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 102.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 102.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 99.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 98.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 98.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 98.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 97.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 95.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 94.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 92.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 89.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 86.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 85.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 84.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 83.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 81.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 81.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 79.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 78.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 78.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 75.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 74.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 73.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 73.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 73.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 70.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 70.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 68.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 68.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 67.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 66.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 64.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 63.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 62.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 51.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 50.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 50.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 50.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 48.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 30.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 28.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 652.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 652.9
FF:10151-102I7 76 years, female 652.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 50.5
Pig sample Sample description nTPM
Amygdala
nTPM: 50.5
Samples: 4

Max nTPM: 88.6
Min nTPM: 27.4
Sample A Female 39.8
Sample B Female 88.6
Sample C Male 46.3
Sample D Male 27.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 19.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 19.8
Samples: 4

Max nTPM: 26.3
Min nTPM: 14.7
Sample A Male 21.9
Sample B Male 14.7
Sample C Female 16.3
Sample D Female 26.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.4
513488 Antisense, RP_040810_01_H07, Mouse strain C57BL/6J (56 days, male) 2.5
69015350 Antisense, RP_050310_02_G08, Mouse strain C57BL/6J (56 days, male) 0.9
75651180 Antisense, RP_060518_01_C06, Mouse strain C57BL/6J (56 days, male) 0.7
70436740 Antisense, RP_050310_02_G08, Mouse strain C57BL/6J (56 days, male) 0.5

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