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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:745.5 nTPM
GTEx:745.5 nTPM
FANTOM5:207.8 Scaled Tags Per Million
Pig:179.4 nTPM
Mouse:40.1 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 745.5
GTEx sample id Sample description nTPM
Retina
Average nTPM: 745.5
Samples: 105

Max nTPM: 1485.6
Min nTPM: 433.4
Std nTPM: 181.8
Median nTPM:
308_1 70 years, female 1485.6
137_1 83 years, male 1278.8
4_1 88 years, female 1255.7
501_1 88 years, male 1228.0
2_1 77 years, female 1134.9
495_1 57 years, female 1112.3
17_1 71 years, male 1072.3
379_1 60 years, male 1066.3
295_1 61 years, female 982.4
307_1 66 years, female 964.4
264_1 73 years, female 925.9
452_1 88 years, female 918.7
314_1 67 years, male 890.2
518_1 75 years, female 887.9
117_1 61 years, male 886.6
480_1 63 years, male 874.8
506_1 65 years, male 872.1
322_1 76 years, male 864.9
35_1 74 years, female 863.4
142_1 61 years, female 862.9
81_1 67 years, male 854.9
41_1 94 years, female 847.0
413_1 59 years, female 845.4
377_1 82 years, female 842.2
288_1 66 years, female 841.6
120_1 70 years, female 834.8
389_1 86 years, female 824.4
18_1 88 years, male 821.7
173_1 67 years, male 818.6
315_1 62 years, female 816.6
414_1 84 years, female 814.7
43_1 64 years, female 806.0
149_1 88 years, male 803.5
126_1 63 years, male 802.9
189_1 76 years, male 801.9
394_1 75 years, female 801.5
313_1 79 years, female 799.8
375_1 74 years, female 791.2
265_1 87 years, male 788.7
404_1 82 years, female 779.4
162_1 79 years, female 767.9
42_1 85 years, male 767.0
217_1 76 years, male 765.9
406_1 79 years, male 763.1
316_1 62 years, male 761.7
177_1 74 years, male 760.6
348_1 84 years, male 756.5
89_1 63 years, male 744.0
99_1 64 years, male 735.7
293_1 68 years, female 733.9
503_1 68 years, male 733.0
396_1 62 years, male 729.1
229_1 69 years, female 727.2
491_1 89 years, female 720.5
384_1 83 years, male 719.0
292_1 71 years, male 713.0
351_1 91 years, male 698.9
526_1 61 years, male 698.5
321_1 62 years, female 696.4
286_1 68 years, female 695.8
376_1 75 years, female 693.2
237_1 82 years, male 687.6
246_1 77 years, male 685.8
320_1 89 years, female 682.4
109_1 81 years, female 680.6
490_1 67 years, female 674.5
354_1 81 years, female 674.1
32_1 67 years, male 672.9
466_1 57 years, female 672.9
349_1 83 years, male 661.9
405_1 91 years, male 659.6
145_1 84 years, male 651.8
251_1 78 years, male 646.7
386_1 76 years, male 646.0
218_1 71 years, female 642.3
499_1 55 years, female 637.6
324_1 76 years, male 635.5
153_1 70 years, female 631.0
447_1 81 years, male 627.6
415_1 77 years, female 625.6
266_1 85 years, male 620.0
319_1 81 years, male 617.8
317_1 60 years, male 609.4
139_1 64 years, female 604.7
318_1 68 years, male 598.1
356_1 87 years, female 592.6
9_1 66 years, female 586.9
163_1 78 years, male 584.3
311_1 78 years, male 576.9
291_1 76 years, male 575.7
350_1 84 years, female 557.1
115_1 83 years, male 556.4
119_1 70 years, female 551.4
353_1 82 years, female 540.2
352_1 62 years, male 536.1
347_1 72 years, male 531.2
517_1 88 years, male 520.6
243_1 75 years, male 517.4
6_1 73 years, female 500.8
355_1 70 years, female 497.2
254_1 77 years, female 495.8
468_1 89 years, male 491.2
335_1 73 years, female 472.0
172_1 72 years, female 467.5
425_1 59 years, female 433.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 207.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 207.8
FF:10030-101E3 24-65 years, mixed 207.8

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 179.4
Pig sample Sample description nTPM
Retina
nTPM: 179.4
Samples: 4

Max nTPM: 205.1
Min nTPM: 122.4
Sample A Female 198.8
Sample B Female 205.1
Sample C Male 191.1
Sample D Male 122.4

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 40.1
Mouse sample Sample description nTPM
Retina
nTPM: 40.1
Samples: 4

Max nTPM: 48.2
Min nTPM: 32.5
Sample A Male 48.2
Sample B Male 32.5
Sample C Female 40.1
Sample D Female 39.7

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by the Knut & Alice Wallenberg Foundation.