MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:645.3 nTPM
HPA:645.3 nTPM
GTEx:863.5 nTPM
FANTOM5:4522.6 Scaled Tags Per Million
Pig:358.2 nTPM
Mouse:104.1 nTPM
Allen mouse:3.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 645.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 376.9
1870 Female, age 42, unknown 511.8
2019 Male, age 18, unknown 481.8
2411 Female, age 72, unknown 479.3
1830 Male, age 51, unknown 445.2
1833 Male, age 53, unknown 407.9
2828 Female, age 72, unknown 339.8
2666 Male, age 74, left hemisphere 305.1
1827 Male, age 72, unknown 278.8
2219 Male, age 76, both hemispheres 270.8
2586 Male, age 75, left hemisphere 249.0
Dorsal raphe nucleus
nTPM: 355.6
2750 Male, age 76, both hemispheres 418.0
1828 Male, age 53, unknown 410.7
2047 Male, age 72, unknown 341.7
2016 Female, age 72, unknown 323.1
2298 Female, age 72, unknown 284.4
Inferior colliculus
nTPM: 307.9
1848 Female, age 42, unknown 346.4
1890 Male, age 53, unknown 311.3
2097 Female, age 72, unknown 301.5
2849 Male, age 72, unknown 272.6
Median raphe nucleus
nTPM: 349.3
2220 Male, age 76, midline 349.3
Pedunculopontine tegmental nucleus
nTPM: 645.3
2338 Male, age 61, both hemispheres 1166.1
2334 Male, age 80, both hemispheres 427.0
1921 Female, age 85, both hemispheres 342.9
Periaquaductal grey, anterior
nTPM: 250.8
1947 Male, age 18, unknown 279.0
1795 Male, age 51, unknown 249.8
2502 Female, age 75, unknown 223.5
Periaquaductal grey, dorsal
nTPM: 253.6
2464 Female, age 72, unknown 297.3
1831 Male, age 72, unknown 269.2
2850 Male, age 76, both hemispheres 239.4
1840 Male, age 53, unknown 208.6
Periaquaductal grey, lateral
nTPM: 291.4
2272 Male, age 74, both hemispheres 360.0
2053 Male, age 18, unknown 280.9
2140 Male, age 76, both hemispheres 233.4
Pretectal area
nTPM: 299.5
2407 Male, age 75, both hemispheres 379.8
2273 Male, age 74, both hemispheres 359.0
1817 Female, age 42, unknown 345.3
2316 Male, age 76, right hemisphere 330.5
1815 Male, age 53, unknown 320.3
2007 Male, age 72, unknown 298.4
2825 Male, age 18, unknown 279.3
2224 Female, age 72, unknown 276.1
1944 Female, age 72, unknown 258.2
1816 Male, age 51, unknown 225.2
2667 Female, age 75, unknown 221.9
Red nucleus
nTPM: 557.0
1865 Male, age 51, unknown 760.2
1821 Female, age 72, unknown 751.4
1954 Female, age 42, unknown 676.8
1904 Male, age 53, unknown 664.9
2769 Male, age 72, unknown 602.3
2227 Male, age 72, unknown 594.2
2503 Female, age 72, unknown 527.5
2725 Female, age 75, unknown 512.9
2785 Male, age 18, unknown 490.2
2823 Male, age 76, right hemisphere 462.0
2584 Male, age 75, left hemisphere 338.3
2588 Male, age 74, left hemisphere 303.5
Substantia nigra
nTPM: 405.5
2590 Female, age 75, unknown 918.3
2409 Female, age 72, unknown 402.2
1889 Female, age 72, unknown 384.4
1851 Male, age 51, unknown 373.2
2583 Male, age 75, right hemisphere 354.5
1941 Male, age 53, unknown 348.5
2699 Male, age 18, unknown 345.0
2241 Male, age 72, unknown 343.0
1916 Female, age 42, unknown 333.9
2665 Male, age 74, both hemispheres 252.2
Superior colliculus
nTPM: 315.5
2587 Male, age 74, left hemisphere 466.2
1913 Female, age 42, unknown 408.5
1995 Male, age 72, unknown 339.1
1839 Male, age 51, unknown 320.7
1895 Male, age 76, right hemisphere 299.0
2668 Female, age 75, unknown 292.6
1796 Male, age 53, unknown 278.6
2087 Female, age 72, unknown 266.6
2261 Male, age 18, unknown 244.3
2664 Male, age 75, both hemispheres 238.9
Ventral tegmental area
nTPM: 388.8
2223 Female, age 72, unknown 513.8
2410 Female, age 72, unknown 459.4
2218 Male, age 76, both hemispheres 353.4
2021 Male, age 53, unknown 344.0
1915 Female, age 42, unknown 342.6
1942 Male, age 51, unknown 320.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 863.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 863.5
Samples: 139

Max nTPM: 4862.1
Min nTPM: 105.2
Std nTPM: 702.7
Median nTPM: 640.3
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 4862.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 3291.1
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 3142.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 2760.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 2682.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 2670.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 2536.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 2324.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 2158.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 2124.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 1876.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 4522.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 4522.6
FF:10158-103A5 76 years, female 4522.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 358.2
Pig sample Sample description nTPM
Midbrain
nTPM: 358.2
Samples: 4

Max nTPM: 782.7
Min nTPM: 125.2
Sample A Female 782.7
Sample B Female 315.3
Sample C Male 125.2
Sample D Male 209.7
Periaqueductal gray
nTPM: 200.2
Samples: 3

Max nTPM: 289.3
Min nTPM: 134.1
Sample B Female 289.3
Sample C Male 134.1
Sample D Male 177.3
Substantia nigra
nTPM: 310.2
Samples: 4

Max nTPM: 449.5
Min nTPM: 208.9
Sample A Female 346.7
Sample B Female 208.9
Sample C Male 235.7
Sample D Male 449.5
Superior colliculi
nTPM: 273.9
Samples: 4

Max nTPM: 405.5
Min nTPM: 159.2
Sample A Female 405.5
Sample B Female 159.2
Sample C Male 217.6
Sample D Male 313.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 104.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 104.1
Samples: 4

Max nTPM: 124.6
Min nTPM: 92.4
Sample A Male 97.9
Sample B Male 124.6
Sample C Female 101.4
Sample D Female 92.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.9
513488 Antisense, RP_040810_01_H07, Mouse strain C57BL/6J (56 days, male) 4.4
75651180 Antisense, RP_060518_01_C06, Mouse strain C57BL/6J (56 days, male) 3.9
69015350 Antisense, RP_050310_02_G08, Mouse strain C57BL/6J (56 days, male) 3.4
70436740 Antisense, RP_050310_02_G08, Mouse strain C57BL/6J (56 days, male) 3.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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