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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:1926.9 nTPM
GTEx:2264.0 nTPM
FANTOM5:1033.7 Scaled Tags Per Million
Pig:2779.9 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 1926.9
Sample id Sample description nTPM
Putamen
nTPM: 1926.9
2482 Female, age 94, left hemisphere 2334.6
1829 Male, age 74, unknown 2307.0
2647 Male, age 75, left hemisphere 2085.4
1937 Female, age 91, right hemisphere 1898.4
2489 Female, age 72, unknown 1824.0
2466 Female, age 79, unknown 1760.4
1838 Male, age 80, right hemisphere 1278.2

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2264.0
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 2264.0
Samples: 205

Max nTPM: 9014.5
Min nTPM: 639.1
Std nTPM: 1087.7
Median nTPM: 2090.3
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 9014.5
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 7632.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 6136.3
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 4589.0
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 4469.5
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 4298.2
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 4150.0
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 4107.9
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 4027.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 4024.0
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 4003.0
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 3959.9
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 3920.9
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 3911.3
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 3805.8
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 3804.6
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 3605.5
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 3587.3
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 3587.0
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 3441.0
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 3440.4
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 3412.4
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 3380.9
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 3365.1
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 3357.8
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 3336.8
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 3265.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 3251.9
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 3250.7
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 3245.2
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 3221.4
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 3180.6
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 3173.2
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 3153.7
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 3138.7
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 3136.8
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 3123.9
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 3109.4
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 3083.6
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 3068.5
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 3066.1
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 3061.8
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 3012.5
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 2922.3
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 2920.5
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 2904.1
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 2871.1
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 2852.6
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 2811.6
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 2810.1
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 2803.9
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 2774.3
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 2757.8
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 2721.4
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 2711.6
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 2685.1
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 2685.1
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 2673.2
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 2671.7
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 2648.7
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 2636.1
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 2632.0
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 2607.8
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 2580.3
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 2574.5
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 2568.4
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 2559.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 2557.2
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 2554.7
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 2547.4
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 2521.2
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 2510.0
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 2479.0
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 2444.1
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 2423.9
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 2410.7
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 2402.7
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 2384.0
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 2373.0
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 2355.4
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 2346.2
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 2342.1
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 2338.0
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 2326.7
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 2319.8
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 2303.7
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 2283.6
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 2272.2
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 2259.4
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 2247.6
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 2239.3
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 2235.3
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 2233.9
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 2196.6
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 2175.1
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 2152.4
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 2145.1
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 2139.2
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 2128.3
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 2121.5
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 2093.1
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 2091.1
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 2090.3
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 2082.9
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 2051.8
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 2045.5
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 2036.2
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 2011.9
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 2000.5
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 1993.6
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 1991.0
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 1965.8
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 1947.9
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 1935.7
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 1932.5
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 1932.0
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 1917.8
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 1896.3
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 1889.6
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 1889.5
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 1858.6
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 1849.4
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 1833.2
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 1825.8
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 1807.8
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 1805.3
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 1802.9
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 1798.4
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 1792.8
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 1775.3
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 1757.4
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 1751.9
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 1750.4
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 1747.2
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 1747.0
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 1737.0
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 1722.2
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 1720.8
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 1713.1
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 1709.4
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 1692.2
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 1679.6
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 1676.7
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 1665.1
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 1663.4
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 1624.2
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 1616.6
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 1609.5
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 1608.3
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 1603.6
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 1599.3
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 1577.2
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 1567.4
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 1565.5
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 1564.1
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 1562.9
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 1548.8
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 1548.2
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 1543.3
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 1535.5
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 1525.5
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 1518.5
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 1486.5
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 1478.4
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 1420.0
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 1396.7
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 1385.4
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 1347.1
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 1327.7
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 1306.2
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 1300.6
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 1289.9
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 1270.0
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 1268.5
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 1259.8
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 1245.8
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 1240.9
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 1214.6
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 1207.9
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 1194.9
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 1178.2
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 1172.8
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 1172.2
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 1168.7
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 1135.3
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 1123.6
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 1116.7
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 1109.7
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 1052.3
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 1015.9
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 994.2
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 991.0
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 961.1
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 953.8
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 909.0
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 907.6
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 906.6
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 865.6
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 836.1
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 830.2
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 805.1
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 772.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 737.5
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 671.5
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 639.1
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1033.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 1033.7
FF:10176-103C5 60 years, female 1033.7

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2779.9
Pig sample Sample description nTPM
Putamen
nTPM: 2779.9
Samples: 4

Max nTPM: 4938.7
Min nTPM: 1181.3
Sample A Female 4938.7
Sample B Female 1181.3
Sample C Male 1860.3
Sample D Male 3139.1

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