MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:179.0 nTPM
HPA:179.0 nTPM
GTEx:140.9 nTPM
FANTOM5:164.9 Scaled Tags Per Million
Pig:58.6 nTPM
Mouse:66.5 nTPM
Allen mouse:9.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 179.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 174.4
2586 Male, age 75, left hemisphere 194.8
2019 Male, age 18, unknown 183.0
2828 Female, age 72, unknown 181.4
1833 Male, age 53, unknown 177.9
1830 Male, age 51, unknown 173.3
2666 Male, age 74, left hemisphere 172.2
2411 Female, age 72, unknown 172.0
1827 Male, age 72, unknown 169.6
1870 Female, age 42, unknown 165.3
2219 Male, age 76, both hemispheres 154.8
Dorsal raphe nucleus
nTPM: 165.9
2750 Male, age 76, both hemispheres 182.0
2047 Male, age 72, unknown 173.6
1828 Male, age 53, unknown 168.7
2016 Female, age 72, unknown 165.6
2298 Female, age 72, unknown 139.5
Inferior colliculus
nTPM: 167.8
2849 Male, age 72, unknown 177.8
1848 Female, age 42, unknown 174.1
1890 Male, age 53, unknown 170.4
2097 Female, age 72, unknown 148.8
Median raphe nucleus
nTPM: 178.6
2220 Male, age 76, midline 178.6
Pedunculopontine tegmental nucleus
nTPM: 165.1
2334 Male, age 80, both hemispheres 168.5
2338 Male, age 61, both hemispheres 166.3
1921 Female, age 85, both hemispheres 160.6
Periaquaductal grey, anterior
nTPM: 150.8
1947 Male, age 18, unknown 156.9
1795 Male, age 51, unknown 155.9
2502 Female, age 75, unknown 139.8
Periaquaductal grey, dorsal
nTPM: 165.6
2850 Male, age 76, both hemispheres 177.8
2464 Female, age 72, unknown 174.3
1831 Male, age 72, unknown 155.5
1840 Male, age 53, unknown 154.7
Periaquaductal grey, lateral
nTPM: 163.8
2140 Male, age 76, both hemispheres 189.6
2053 Male, age 18, unknown 156.7
2272 Male, age 74, both hemispheres 145.1
Pretectal area
nTPM: 164.8
2316 Male, age 76, right hemisphere 181.4
1817 Female, age 42, unknown 172.4
1815 Male, age 53, unknown 172.0
2007 Male, age 72, unknown 171.9
1944 Female, age 72, unknown 169.2
2667 Female, age 75, unknown 167.4
2407 Male, age 75, both hemispheres 160.5
2825 Male, age 18, unknown 159.5
1816 Male, age 51, unknown 159.1
2224 Female, age 72, unknown 150.5
2273 Male, age 74, both hemispheres 148.6
Red nucleus
nTPM: 179.0
2588 Male, age 74, left hemisphere 210.0
2823 Male, age 76, right hemisphere 191.5
2503 Female, age 72, unknown 186.4
2725 Female, age 75, unknown 182.6
2785 Male, age 18, unknown 179.8
1865 Male, age 51, unknown 179.0
2769 Male, age 72, unknown 176.6
2227 Male, age 72, unknown 174.4
1954 Female, age 42, unknown 172.9
1904 Male, age 53, unknown 172.6
1821 Female, age 72, unknown 170.0
2584 Male, age 75, left hemisphere 152.0
Substantia nigra
nTPM: 170.1
2583 Male, age 75, right hemisphere 178.3
1916 Female, age 42, unknown 176.9
1941 Male, age 53, unknown 172.2
2699 Male, age 18, unknown 172.0
1889 Female, age 72, unknown 169.8
2241 Male, age 72, unknown 169.6
2409 Female, age 72, unknown 169.3
1851 Male, age 51, unknown 168.5
2590 Female, age 75, unknown 165.0
2665 Male, age 74, both hemispheres 159.4
Superior colliculus
nTPM: 162.0
2668 Female, age 75, unknown 173.2
1895 Male, age 76, right hemisphere 168.8
1839 Male, age 51, unknown 165.7
1796 Male, age 53, unknown 165.0
2087 Female, age 72, unknown 164.3
1913 Female, age 42, unknown 162.9
1995 Male, age 72, unknown 156.3
2664 Male, age 75, both hemispheres 155.0
2261 Male, age 18, unknown 154.9
2587 Male, age 74, left hemisphere 154.2
Ventral tegmental area
nTPM: 167.1
2218 Male, age 76, both hemispheres 177.3
2410 Female, age 72, unknown 173.2
1915 Female, age 42, unknown 164.9
1942 Male, age 51, unknown 164.2
2223 Female, age 72, unknown 162.8
2021 Male, age 53, unknown 160.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 140.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 140.9
Samples: 139

Max nTPM: 260.6
Min nTPM: 87.3
Std nTPM: 33.0
Median nTPM: 138.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 260.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 240.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 231.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 225.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 216.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 199.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 199.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 198.7
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 194.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 192.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 190.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 164.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 164.9
FF:10158-103A5 76 years, female 164.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 58.6
Pig sample Sample description nTPM
Midbrain
nTPM: 58.6
Samples: 4

Max nTPM: 68.8
Min nTPM: 50.1
Sample A Female 61.5
Sample B Female 50.1
Sample C Male 68.8
Sample D Male 53.9
Periaqueductal gray
nTPM: 52.8
Samples: 3

Max nTPM: 56.0
Min nTPM: 50.5
Sample B Female 56.0
Sample C Male 50.5
Sample D Male 51.8
Substantia nigra
nTPM: 56.2
Samples: 4

Max nTPM: 66.1
Min nTPM: 46.3
Sample A Female 46.3
Sample B Female 54.4
Sample C Male 57.9
Sample D Male 66.1
Superior colliculi
nTPM: 54.2
Samples: 4

Max nTPM: 66.5
Min nTPM: 43.5
Sample A Female 43.5
Sample B Female 49.0
Sample C Male 66.5
Sample D Male 57.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 66.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 66.5
Samples: 4

Max nTPM: 75.3
Min nTPM: 54.0
Sample A Male 54.0
Sample B Male 75.3
Sample C Female 64.0
Sample D Female 72.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.9
69736400 Antisense, RP_050503_04_G01, Mouse strain C57BL/6J (56 days, male) 9.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.