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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:182.9 nTPM
HPA:182.9 nTPM
FANTOM5:184.9 Scaled Tags Per Million
Pig:52.7 nTPM
Allen mouse:6.6 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 182.9
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 165.6
2188 Female, age 91, both hemispheres 169.8
2090 Male, age 80, both hemispheres 164.5
1984 Male, age 76, both hemispheres 164.1
2301 Female, age 85, both hemispheres 163.9
Dorsal cochlear nucleus
nTPM: 166.7
2058 Male, age 76, both hemispheres 186.7
2187 Female, age 91, both hemispheres 171.5
2378 Male, age 80, both hemispheres 161.1
2802 Male, age 74, right hemisphere 157.1
2370 Male, age 61, both hemispheres 157.0
Dorsal tegmental nucleus
nTPM: 168.7
1936 Male, age 76, left hemisphere 179.7
2083 Male, age 80, both hemispheres 175.7
2326 Male, age 74, both hemispheres 167.0
2358 Male, age 61, both hemispheres 152.5
Dorsolateral tegmental area
nTPM: 168.6
2654 Male, age 80, both hemispheres 178.7
2141 Male, age 76, both hemispheres 171.1
2751 Female, age 85, both hemispheres 169.5
2337 Male, age 61, both hemispheres 169.1
2360 Male, age 74, both hemispheres 154.4
Kolliker-Fuse nucleus
nTPM: 182.9
2315 Male, age 76, right hemisphere 197.4
2793 Female, age 91, left hemisphere 177.3
2163 Male, age 80, both hemispheres 174.1
Lateral lemniscal nuclei
nTPM: 163.8
2320 Female, age 91, left hemisphere 173.9
2453 Male, age 74, right hemisphere 168.9
2169 Male, age 76, both hemispheres 165.1
2036 Male, age 80, both hemispheres 157.0
2746 Female, age 85, left hemisphere 153.9
Lateral parabrachial nucleus
nTPM: 166.6
2792 Male, age 76, both hemispheres 185.3
2139 Female, age 85, right hemisphere 165.5
2013 Male, age 80, both hemispheres 158.4
2790 Male, age 61, both hemispheres 157.3
Lateral vestibular nucleus
nTPM: 179.8
2184 Male, age 76, both hemispheres 194.2
2311 Male, age 80, both hemispheres 165.3
Locus coeruleus
nTPM: 156.7
2788 Male, age 74, unknown 168.4
1980 Male, age 76, both hemispheres 167.9
2014 Male, age 55, unknown 155.2
2317 Female, age 72, unknown 152.4
2162 Male, age 80, both hemispheres 152.2
2123 Female, age 91, both hemispheres 150.9
2720 Male, age 74, both hemispheres 150.2
Medial olivary nucleus
nTPM: 181.5
2138 Female, age 91, both hemispheres 191.1
1943 Male, age 61, both hemispheres 183.0
1962 Male, age 76, both hemispheres 176.5
2851 Male, age 80, both hemispheres 175.5
Medial parabrachial nucleus
nTPM: 171.4
2786 Male, age 76, both hemispheres 184.2
2156 Male, age 61, both hemispheres 173.3
2170 Female, age 91, both hemispheres 169.6
2463 Female, age 85, right hemisphere 169.2
2854 Male, age 80, both hemispheres 160.5
Medial periolivary nuclei
nTPM: 164.4
2458 Female, age 91, both hemispheres 185.4
2171 Female, age 85, both hemispheres 165.4
2081 Male, age 80, both hemispheres 159.5
2063 Male, age 76, both hemispheres 159.4
2791 Male, age 74, right hemisphere 152.2
Motor facial nucleus
nTPM: 165.1
2795 Female, age 91, both hemispheres 202.3
2062 Male, age 76, both hemispheres 162.6
2126 Male, age 61, both hemispheres 160.7
2697 Female, age 85, both hemispheres 159.6
2365 Male, age 74, right hemisphere 154.7
2327 Male, age 80, both hemispheres 150.7
Motor trigeminal nucleus
nTPM: 170.7
2309 Male, age 76, both hemispheres 190.3
2321 Female, age 91, both hemispheres 184.1
2560 Male, age 74, both hemispheres 162.7
2335 Male, age 61, both hemispheres 159.3
2079 Male, age 80, both hemispheres 157.0
Nuclei of the trapezoid body
nTPM: 164.9
2368 Female, age 91, both hemispheres 191.9
2166 Male, age 80, both hemispheres 165.4
2735 Female, age 85, both hemispheres 158.4
1983 Male, age 76, both hemispheres 157.0
2159 Male, age 61, both hemispheres 151.7
Paramedian reticular nucleus
nTPM: 168.6
2052 Male, age 76, both hemispheres 182.4
2057 Male, age 80, both hemispheres 175.7
2050 Female, age 85, both hemispheres 159.8
2313 Male, age 61, both hemispheres 156.6
Pontine nuclei
nTPM: 159.4
1863 Male, age 55, unknown 169.1
2115 Male, age 80, left hemisphere 164.7
2109 Female, age 72, unknown 162.9
2319 Female, age 91, both hemispheres 162.3
2454 Male, age 74, left hemisphere 160.9
1968 Male, age 76, left hemisphere 155.9
2787 Female, age 85, both hemispheres 155.8
2727 Male, age 61, right hemisphere 143.4
Pontine raphe nucleus
nTPM: 163.4
2853 Male, age 76, midline 172.9
2122 Female, age 85, midline 153.9
Posteroventral cochlear nucleus
nTPM: 168.2
2135 Female, age 91, both hemispheres 177.2
2341 Male, age 80, both hemispheres 173.3
2070 Male, age 76, both hemispheres 171.2
2752 Female, age 85, both hemispheres 164.6
2371 Male, age 61, both hemispheres 154.5
Principal sensory trigeminal nucleus
nTPM: 168.3
2324 Male, age 76, both hemispheres 198.2
2367 Female, age 91, left hemisphere 170.4
2008 Male, age 80, left hemisphere 155.3
2158 Male, age 61, both hemispheres 149.3
Reticular pontine nucleus, caudal
nTPM: 169.7
2457 Female, age 91, both hemispheres 179.0
2092 Male, age 76, both hemispheres 173.0
2559 Male, age 74, both hemispheres 170.6
2332 Male, age 80, right hemisphere 156.2
Reticular pontine nucleus, oral
nTPM: 170.7
2366 Female, age 91, both hemispheres 182.2
2167 Male, age 76, both hemispheres 180.3
1939 Male, age 80, both hemispheres 179.7
2012 Female, age 85, both hemispheres 165.0
2361 Male, age 74, both hemispheres 146.4
Reticulotegmental nucleus
nTPM: 171.1
2322 Female, age 91, both hemispheres 175.0
2325 Male, age 76, both hemispheres 173.2
2333 Male, age 80, both hemispheres 171.3
2452 Male, age 74, both hemispheres 165.1
Spinal trigeminal nucleus, oral
nTPM: 163.7
1978 Male, age 76, both hemispheres 168.2
2737 Female, age 85, both hemispheres 163.2
2164 Male, age 80, both hemispheres 159.7
Subcoeruleus area
nTPM: 165.2
2369 Female, age 85, left hemisphere 173.5
2089 Male, age 76, left hemisphere 168.9
1958 Male, age 80, both hemispheres 163.1
2323 Female, age 91, left hemisphere 161.3
2451 Male, age 74, both hemispheres 159.0
Superior olive
nTPM: 161.2
2561 Female, age 91, both hemispheres 177.3
2329 Male, age 80, right hemisphere 164.8
1875 Female, age 85, both hemispheres 157.0
2020 Male, age 76, both hemispheres 156.0
2364 Male, age 74, right hemisphere 151.0
Superior vestibular nucleus
nTPM: 173.4
2061 Male, age 76, both hemispheres 202.7
2015 Male, age 80, both hemispheres 164.7
2383 Male, age 74, both hemispheres 152.9
Ventral periolivary nuclei
nTPM: 162.9
2130 Female, age 85, both hemispheres 167.6
2794 Female, age 91, left hemisphere 167.5
2165 Male, age 80, both hemispheres 159.6
2023 Male, age 76, both hemispheres 157.0
Ventrolateral tegmental area, A5 NE cell group
nTPM: 166.4
2456 Female, age 91, both hemispheres 185.0
2359 Male, age 61, both hemispheres 170.0
1959 Male, age 76, both hemispheres 166.4
2840 Female, age 85, both hemispheres 163.8
2449 Male, age 74, both hemispheres 160.4
2161 Male, age 80, both hemispheres 152.9

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 184.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 184.9
FF:10182-103D2 60 years, female 189.2
FF:10165-103B3 76 years, female 180.7
Pons
Scaled Tags Per Million: 147.1
FF:10033-101E6 18-54 years, mixed 147.1

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 52.7
Pig sample Sample description nTPM
Pons
nTPM: 52.7
Samples: 4

Max nTPM: 57.9
Min nTPM: 46.6
Sample A Female 57.9
Sample B Female 55.8
Sample C Male 46.6
Sample D Male 50.6

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 6.6
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 6.6
69736400 Antisense, RP_050503_04_G01, Mouse strain C57BL/6J (56 days, male) 6.6

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by the Knut & Alice Wallenberg Foundation.