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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:155.6 nTPM
HPA:155.6 nTPM
GTEx:118.1 nTPM
FANTOM5:166.8 Scaled Tags Per Million
Pig:65.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 155.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 155.6
2194 Female, age 79, both hemispheres 170.3
2816 Male, age 47, midline 162.7
2048 Male, age 55, midline 159.5
1981 Female, age 72, midline 151.8
2565 Male, age 75, midline 133.5
Cervical spinal cord, dorsal horn
nTPM: 146.1
2296 Male, age 66, both hemispheres 172.9
2173 Female, age 72, unknown 156.5
1877 Male, age 55, unknown 149.0
2721 Male, age 90, both hemispheres 139.5
2069 Male, age 47, both hemispheres 137.1
2297 Male, age 75, both hemispheres 121.5
Cervical spinal cord, ventral horn
nTPM: 154.2
2820 Female, age 79, both hemispheres 189.8
2068 Male, age 55, unknown 162.7
2809 Male, age 90, both hemispheres 149.2
2098 Female, age 72, unknown 144.0
2295 Male, age 66, both hemispheres 143.6
2480 Male, age 75, both hemispheres 136.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 118.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 118.1
Samples: 159

Max nTPM: 202.5
Min nTPM: 61.2
Std nTPM: 22.9
Median nTPM: 119.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 202.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 175.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 167.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 165.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 159.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 157.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 154.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 152.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 148.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 148.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 148.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 147.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 147.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 147.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 146.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 146.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 146.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 145.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 144.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 143.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 142.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 142.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 142.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 141.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 141.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 140.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 139.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 139.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 138.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 138.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 137.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 137.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 136.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 135.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 134.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 133.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 133.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 133.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 133.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 132.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 131.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 131.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 131.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 131.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 130.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 130.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 130.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 130.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 129.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 129.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 129.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 128.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 128.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 128.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 127.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 126.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 126.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 125.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 125.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 125.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 124.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 124.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 122.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 122.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 122.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 122.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 122.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 122.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 122.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 122.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 121.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 121.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 121.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 121.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 120.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 120.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 119.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 119.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 119.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 119.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 119.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 118.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 118.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 118.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 118.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 117.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 117.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 117.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 117.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 117.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 116.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 116.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 116.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 115.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 115.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 114.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 114.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 113.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 113.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 112.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 112.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 111.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 111.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 111.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 110.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 110.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 109.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 109.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 109.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 108.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 108.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 108.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 107.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 107.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 106.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 106.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 106.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 105.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 105.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 103.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 102.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 101.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 101.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 101.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 100.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 100.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 98.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 98.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 97.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 96.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 95.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 95.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 94.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 94.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 94.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 92.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 92.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 91.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 91.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 91.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 89.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 88.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 87.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 87.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 86.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 85.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 82.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 81.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 81.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 81.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 78.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 77.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 72.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 72.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 72.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 69.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 68.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 67.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 61.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 166.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 166.8
FF:10159-103A6 76 years, female 185.3
FF:10181-103D1 60 years, female 148.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 65.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 57.5
Samples: 4

Max nTPM: 67.1
Min nTPM: 41.9
Sample A Female 67.1
Sample B Female 55.8
Sample C Male 41.9
Sample D Male 65.2
Ventral spinal cord
nTPM: 65.1
Samples: 4

Max nTPM: 74.5
Min nTPM: 53.8
Sample A Female 74.5
Sample B Female 67.1
Sample C Male 53.8
Sample D Male 65.0

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