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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:193.2 nTPM
HPA:193.2 nTPM
FANTOM5:166.2 Scaled Tags Per Million
Pig:57.7 nTPM
Mouse:67.0 nTPM
Allen mouse:9.8 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 193.2
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 176.1
2497 Male, age 66, unknown 182.9
2032 Female, age 42, unknown 181.8
2396 Male, age 61, right hemisphere 163.5
Centromedial thalamic nucleus
nTPM: 185.9
2279 Female, age 85, left hemisphere 188.9
2401 Male, age 76, right hemisphere 182.9
Habenula
nTPM: 158.7
2276 Male, age 66, unknown 162.9
1957 Male, age 80, both hemispheres 161.6
2252 Male, age 62, unknown 155.9
2203 Male, age 61, left hemisphere 154.3
Lateral geniculate body
nTPM: 182.8
2659 Male, age 66, unknown 219.9
2857 Male, age 74, right hemisphere 192.5
2841 Male, age 80, both hemispheres 192.3
2035 Female, age 72, unknown 187.8
2399 Male, age 61, left hemisphere 185.9
1953 Male, age 62, unknown 173.0
2575 Female, age 94, right hemisphere 162.3
2106 Female, age 67, right hemisphere 148.7
Lateral thalamic nuclei
nTPM: 180.8
2577 Male, age 74, both hemispheres 229.0
2661 Female, age 72, unknown 193.2
1903 Male, age 76, left hemisphere 164.2
2765 Female, age 67, both hemispheres 160.1
2573 Female, age 94, left hemisphere 157.2
Medial dorsal thalamic nucleus
nTPM: 164.9
2576 Male, age 74, both hemispheres 203.6
2660 Female, age 72, unknown 194.6
1859 Male, age 76, both hemispheres 170.3
2283 Male, age 80, right hemisphere 163.8
1971 Male, age 61, right hemisphere 162.4
1810 Male, age 48, unknown 161.7
2039 Female, age 72, unknown 160.8
2026 Male, age 62, unknown 159.5
1930 Female, age 42, unknown 159.0
2402 Female, age 67, both hemispheres 157.5
2492 Male, age 75, right hemisphere 156.1
2498 Male, age 66, unknown 155.5
2572 Female, age 94, right hemisphere 139.0
Medial geniculate body
nTPM: 166.5
2217 Female, age 72, unknown 178.8
2571 Male, age 75, right hemisphere 177.4
2657 Male, age 74, right hemisphere 175.2
2207 Male, age 80, right hemisphere 168.9
2049 Male, age 76, both hemispheres 158.2
1811 Female, age 42, unknown 156.4
2650 Female, age 94, left hemisphere 150.4
Nucleus reuniens
nTPM: 173.1
2210 Female, age 85, left hemisphere 197.7
2205 Male, age 80, left hemisphere 182.6
2212 Female, age 67, left hemisphere 139.1
Nucleus rhomboideus
nTPM: 178.8
2280 Female, age 85, left hemisphere 206.5
2206 Male, age 80, both hemispheres 175.0
2213 Female, age 67, left hemisphere 154.8
Posterior thalamic nucleus
nTPM: 170.7
2655 Male, age 74, right hemisphere 193.8
2266 Male, age 76, right hemisphere 180.9
2495 Female, age 67, right hemisphere 155.8
2649 Female, age 94, both hemispheres 152.4
Pulvinar
nTPM: 177.1
2398 Male, age 61, left hemisphere 197.5
2724 Male, age 74, right hemisphere 189.8
1932 Male, age 80, right hemisphere 188.1
2582 Female, age 72, unknown 186.4
1899 Female, age 42, unknown 178.2
1972 Male, age 62, unknown 176.9
1929 Male, age 48, unknown 174.5
2214 Male, age 76, right hemisphere 166.7
2499 Male, age 66, unknown 163.0
2496 Female, age 67, right hemisphere 150.3
Subthalamic nucleus
nTPM: 179.3
2282 Male, age 61, both hemispheres 197.6
2124 Male, age 62, unknown 193.9
2216 Male, age 48, unknown 190.9
2056 Female, age 72, unknown 184.8
2779 Female, age 42, unknown 177.9
2275 Male, age 66, unknown 174.2
2658 Male, age 74, both hemispheres 160.4
2406 Female, age 72, unknown 155.1
Ventral posterolateral thalamic nucleus
nTPM: 193.2
2581 Female, age 72, unknown 228.0
2578 Male, age 74, both hemispheres 220.5
2397 Male, age 61, right hemisphere 188.1
2740 Male, age 76, right hemisphere 182.9
2197 Male, age 80, both hemispheres 174.8
2570 Male, age 75, right hemisphere 165.1
Ventral posteromedial thalamic nucleus
nTPM: 181.5
2653 Male, age 74, both hemispheres 226.0
2127 Male, age 76, right hemisphere 185.7
2758 Male, age 80, both hemispheres 172.4
2202 Male, age 61, left hemisphere 164.4
2281 Male, age 75, right hemisphere 158.8
Ventral thalamic nuclei
nTPM: 186.0
2858 Female, age 72, unknown 220.3
2652 Male, age 74, left hemisphere 212.1
2204 Male, age 80, both hemispheres 198.7
2580 Male, age 66, unknown 193.4
1845 Male, age 48, unknown 177.3
2291 Female, age 72, unknown 172.6
1860 Male, age 76, both hemispheres 172.5
1912 Female, age 42, unknown 163.7
2285 Male, age 62, unknown 163.5
Ventromedial nucleus
nTPM: 154.1
1822 Female, age 42, unknown 155.1
1982 Female, age 72, unknown 153.0
Zona incerta
nTPM: 179.1
2663 Female, age 72, unknown 214.2
2403 Male, age 62, unknown 181.0
2208 Male, age 80, right hemisphere 173.9
2215 Male, age 66, unknown 165.9
2822 Male, age 74, right hemisphere 160.5

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 166.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 166.2
FF:10154-103A1 76 years, female 166.2

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 57.7
Pig sample Sample description nTPM
Thalamus
nTPM: 57.8
Samples: 4

Max nTPM: 60.0
Min nTPM: 52.7
Sample A Female 52.7
Sample B Female 60.0
Sample C Male 58.6
Sample D Male 59.7

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 67.0
Mouse sample Sample description nTPM
Thalamus
nTPM: 67.0
Samples: 4

Max nTPM: 79.2
Min nTPM: 58.4
Sample A Male 61.7
Sample B Male 79.2
Sample C Female 58.4
Sample D Female 68.7

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 9.8
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 9.8
69736400 Antisense, RP_050503_04_G01, Mouse strain C57BL/6J (56 days, male) 9.8

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